Giorgio Gilestro
f60a9d0530
- Tracked DBs now live at /mnt/data/projects/cupido/tracked/ (out of
ownCloud to avoid sync conflicts and bandwidth churn). config.py
TRACKING_OUTPUT_DIR points there; the docker-compose for ethoscope-lab
mounts it world-readable for JupyterHub users.
- New scripts/export_video_db_index.py joins all_video_info_merged.xlsx
with the video inventory and the on-disk DBs, producing a TSV that has
one row per fly/ROI plus training/testing video and DB paths. Handles
approximate xlsx times, cross-day training/testing, the 12 AM/PM
ambiguity, and date typos.
- scripts/load_roi_data.py rewritten as a TSV-driven loader returning a
single DataFrame with session and metadata columns. calculate_distances
and the two flies_analysis notebooks migrated to use it; downstream
trained/naive splits remain available via simple equality filters.
- Metadata vocabulary canonicalized: {naïve, niave, untrained, test} all
resolve to {trained, naive}. Normalization happens at the TSV-export
boundary (idempotent); the xlsx and the 2025-07-15 legacy CSV were
edited in place to remove the worst variants.
- scripts/monitor_tracking.py rate calculation fixed: with N parallel
workers, completions arrive in bursts; the old formula divided by burst
width and reported nonsense rates. Now uses a 6 h window denominator.
- scripts/track_videos.py: BGRMovieCamera retries cv2.read on transient
NFS hiccups and a post-tracking completeness gate (≥ 90 % of expected
duration via MAX(t) across all 6 ROIs) deletes silent partial DBs.
Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
7.8 KiB
7.8 KiB
| 1 | date | HHMMSS | machine_name | ROI | genotype | group | path | filesize_mb |
|---|---|---|---|---|---|---|---|---|
| 2 | 15/07/2025 | 16-03-10 | 76 | 6 | CS | trained | /mnt/ethoscope_data/videos/076e2825a7274661bd0697c42d6fa4c0/ETHOSCOPE_076/2025-07-15_16-03-10/2025-07-15_16-03-10_076e2825a7274661bd0697c42d6fa4c0__1920x1088@25fps-28q_merged.mp4 | 59.4 |
| 3 | 15/07/2025 | 16-03-10 | 76 | 4 | CS | naive | /mnt/ethoscope_data/videos/076e2825a7274661bd0697c42d6fa4c0/ETHOSCOPE_076/2025-07-15_16-03-10/2025-07-15_16-03-10_076e2825a7274661bd0697c42d6fa4c0__1920x1088@25fps-28q_merged.mp4 | 59.4 |
| 4 | 15/07/2025 | 16-03-10 | 76 | 2 | CS | trained | /mnt/ethoscope_data/videos/076e2825a7274661bd0697c42d6fa4c0/ETHOSCOPE_076/2025-07-15_16-03-10/2025-07-15_16-03-10_076e2825a7274661bd0697c42d6fa4c0__1920x1088@25fps-28q_merged.mp4 | 59.4 |
| 5 | 15/07/2025 | 16-03-10 | 76 | 5 | CS | naive | /mnt/ethoscope_data/videos/076e2825a7274661bd0697c42d6fa4c0/ETHOSCOPE_076/2025-07-15_16-03-10/2025-07-15_16-03-10_076e2825a7274661bd0697c42d6fa4c0__1920x1088@25fps-28q_merged.mp4 | 59.4 |
| 6 | 15/07/2025 | 16-03-10 | 76 | 3 | CS | trained | /mnt/ethoscope_data/videos/076e2825a7274661bd0697c42d6fa4c0/ETHOSCOPE_076/2025-07-15_16-03-10/2025-07-15_16-03-10_076e2825a7274661bd0697c42d6fa4c0__1920x1088@25fps-28q_merged.mp4 | 59.4 |
| 7 | 15/07/2025 | 16-03-10 | 76 | 1 | CS | naive | /mnt/ethoscope_data/videos/076e2825a7274661bd0697c42d6fa4c0/ETHOSCOPE_076/2025-07-15_16-03-10/2025-07-15_16-03-10_076e2825a7274661bd0697c42d6fa4c0__1920x1088@25fps-28q_merged.mp4 | 59.4 |
| 8 | 15/07/2025 | 16-31-34 | 76 | 6 | CS | trained | /mnt/ethoscope_data/videos/076e2825a7274661bd0697c42d6fa4c0/ETHOSCOPE_076/2025-07-15_16-31-34/2025-07-15_16-31-34_076e2825a7274661bd0697c42d6fa4c0__1920x1088@25fps-28q_merged.mp4 | 78.98 |
| 9 | 15/07/2025 | 16-31-34 | 76 | 4 | CS | trained | /mnt/ethoscope_data/videos/076e2825a7274661bd0697c42d6fa4c0/ETHOSCOPE_076/2025-07-15_16-31-34/2025-07-15_16-31-34_076e2825a7274661bd0697c42d6fa4c0__1920x1088@25fps-28q_merged.mp4 | 78.98 |
| 10 | 15/07/2025 | 16-31-34 | 76 | 2 | CS | trained | /mnt/ethoscope_data/videos/076e2825a7274661bd0697c42d6fa4c0/ETHOSCOPE_076/2025-07-15_16-31-34/2025-07-15_16-31-34_076e2825a7274661bd0697c42d6fa4c0__1920x1088@25fps-28q_merged.mp4 | 78.98 |
| 11 | 15/07/2025 | 16-31-34 | 76 | 5 | CS | naive | /mnt/ethoscope_data/videos/076e2825a7274661bd0697c42d6fa4c0/ETHOSCOPE_076/2025-07-15_16-31-34/2025-07-15_16-31-34_076e2825a7274661bd0697c42d6fa4c0__1920x1088@25fps-28q_merged.mp4 | 78.98 |
| 12 | 15/07/2025 | 16-31-34 | 76 | 3 | CS | naive | /mnt/ethoscope_data/videos/076e2825a7274661bd0697c42d6fa4c0/ETHOSCOPE_076/2025-07-15_16-31-34/2025-07-15_16-31-34_076e2825a7274661bd0697c42d6fa4c0__1920x1088@25fps-28q_merged.mp4 | 78.98 |
| 13 | 15/07/2025 | 16-31-34 | 76 | 1 | CS | naive | /mnt/ethoscope_data/videos/076e2825a7274661bd0697c42d6fa4c0/ETHOSCOPE_076/2025-07-15_16-31-34/2025-07-15_16-31-34_076e2825a7274661bd0697c42d6fa4c0__1920x1088@25fps-28q_merged.mp4 | 78.98 |
| 14 | 15/07/2025 | 16-03-27 | 145 | 6 | CS | trained | /mnt/ethoscope_data/videos/145bb573497a4e15b0690206748a3af6/ETHOSCOPE_145/2025-07-15_16-03-27/2025-07-15_16-03-27_145bb573497a4e15b0690206748a3af6__1920x1088@25fps-28q_merged.mp4 | 78.72 |
| 15 | 15/07/2025 | 16-03-27 | 145 | 4 | CS | trained | /mnt/ethoscope_data/videos/145bb573497a4e15b0690206748a3af6/ETHOSCOPE_145/2025-07-15_16-03-27/2025-07-15_16-03-27_145bb573497a4e15b0690206748a3af6__1920x1088@25fps-28q_merged.mp4 | 78.72 |
| 16 | 15/07/2025 | 16-03-27 | 145 | 2 | CS | trained | /mnt/ethoscope_data/videos/145bb573497a4e15b0690206748a3af6/ETHOSCOPE_145/2025-07-15_16-03-27/2025-07-15_16-03-27_145bb573497a4e15b0690206748a3af6__1920x1088@25fps-28q_merged.mp4 | 78.72 |
| 17 | 15/07/2025 | 16-03-27 | 145 | 5 | CS | naive | /mnt/ethoscope_data/videos/145bb573497a4e15b0690206748a3af6/ETHOSCOPE_145/2025-07-15_16-03-27/2025-07-15_16-03-27_145bb573497a4e15b0690206748a3af6__1920x1088@25fps-28q_merged.mp4 | 78.72 |
| 18 | 15/07/2025 | 16-03-27 | 145 | 3 | CS | naive | /mnt/ethoscope_data/videos/145bb573497a4e15b0690206748a3af6/ETHOSCOPE_145/2025-07-15_16-03-27/2025-07-15_16-03-27_145bb573497a4e15b0690206748a3af6__1920x1088@25fps-28q_merged.mp4 | 78.72 |
| 19 | 15/07/2025 | 16-03-27 | 145 | 1 | CS | naive | /mnt/ethoscope_data/videos/145bb573497a4e15b0690206748a3af6/ETHOSCOPE_145/2025-07-15_16-03-27/2025-07-15_16-03-27_145bb573497a4e15b0690206748a3af6__1920x1088@25fps-28q_merged.mp4 | 78.72 |
| 20 | 15/07/2025 | 16-31-41 | 145 | 6 | CS | trained | /mnt/ethoscope_data/videos/145bb573497a4e15b0690206748a3af6/ETHOSCOPE_145/2025-07-15_16-31-41/2025-07-15_16-31-41_145bb573497a4e15b0690206748a3af6__1920x1088@25fps-28q_merged.mp4 | 90.9 |
| 21 | 15/07/2025 | 16-31-41 | 145 | 4 | CS | trained | /mnt/ethoscope_data/videos/145bb573497a4e15b0690206748a3af6/ETHOSCOPE_145/2025-07-15_16-31-41/2025-07-15_16-31-41_145bb573497a4e15b0690206748a3af6__1920x1088@25fps-28q_merged.mp4 | 90.9 |
| 22 | 15/07/2025 | 16-31-41 | 145 | 2 | CS | trained | /mnt/ethoscope_data/videos/145bb573497a4e15b0690206748a3af6/ETHOSCOPE_145/2025-07-15_16-31-41/2025-07-15_16-31-41_145bb573497a4e15b0690206748a3af6__1920x1088@25fps-28q_merged.mp4 | 90.9 |
| 23 | 15/07/2025 | 16-31-41 | 145 | 5 | CS | naive | /mnt/ethoscope_data/videos/145bb573497a4e15b0690206748a3af6/ETHOSCOPE_145/2025-07-15_16-31-41/2025-07-15_16-31-41_145bb573497a4e15b0690206748a3af6__1920x1088@25fps-28q_merged.mp4 | 90.9 |
| 24 | 15/07/2025 | 16-31-41 | 145 | 3 | CS | naive | /mnt/ethoscope_data/videos/145bb573497a4e15b0690206748a3af6/ETHOSCOPE_145/2025-07-15_16-31-41/2025-07-15_16-31-41_145bb573497a4e15b0690206748a3af6__1920x1088@25fps-28q_merged.mp4 | 90.9 |
| 25 | 15/07/2025 | 16-31-41 | 145 | 1 | CS | naive | /mnt/ethoscope_data/videos/145bb573497a4e15b0690206748a3af6/ETHOSCOPE_145/2025-07-15_16-31-41/2025-07-15_16-31-41_145bb573497a4e15b0690206748a3af6__1920x1088@25fps-28q_merged.mp4 | 90.9 |
| 26 | 15/07/2025 | 16-31-52 | 139 | 6 | CS | trained | /mnt/ethoscope_data/videos/13924be2046d49f4a641cef2a5559852/ETHOSCOPE_139/2025-07-15_16-31-52/2025-07-15_16-31-52_13924be2046d49f4a641cef2a5559852__1920x1088@25fps-28q_merged.mp4 | 73.4 |
| 27 | 15/07/2025 | 16-31-52 | 139 | 4 | CS | trained | /mnt/ethoscope_data/videos/13924be2046d49f4a641cef2a5559852/ETHOSCOPE_139/2025-07-15_16-31-52/2025-07-15_16-31-52_13924be2046d49f4a641cef2a5559852__1920x1088@25fps-28q_merged.mp4 | 73.4 |
| 28 | 15/07/2025 | 16-31-52 | 139 | 2 | CS | trained | /mnt/ethoscope_data/videos/13924be2046d49f4a641cef2a5559852/ETHOSCOPE_139/2025-07-15_16-31-52/2025-07-15_16-31-52_13924be2046d49f4a641cef2a5559852__1920x1088@25fps-28q_merged.mp4 | 73.4 |
| 29 | 15/07/2025 | 16-31-52 | 139 | 5 | CS | naive | /mnt/ethoscope_data/videos/13924be2046d49f4a641cef2a5559852/ETHOSCOPE_139/2025-07-15_16-31-52/2025-07-15_16-31-52_13924be2046d49f4a641cef2a5559852__1920x1088@25fps-28q_merged.mp4 | 73.4 |
| 30 | 15/07/2025 | 16-31-52 | 139 | 3 | CS | naive | /mnt/ethoscope_data/videos/13924be2046d49f4a641cef2a5559852/ETHOSCOPE_139/2025-07-15_16-31-52/2025-07-15_16-31-52_13924be2046d49f4a641cef2a5559852__1920x1088@25fps-28q_merged.mp4 | 73.4 |
| 31 | 15/07/2025 | 16-31-52 | 139 | 1 | CS | naive | /mnt/ethoscope_data/videos/13924be2046d49f4a641cef2a5559852/ETHOSCOPE_139/2025-07-15_16-31-52/2025-07-15_16-31-52_13924be2046d49f4a641cef2a5559852__1920x1088@25fps-28q_merged.mp4 | 73.4 |
| 32 | 15/07/2025 | 16-32-05 | 268 | 6 | CS | naive | /mnt/ethoscope_data/videos/268102f92f51486f995200c29d980477/ETHOSCOPE_268/2025-07-15_16-32-05/2025-07-15_16-32-05_268102f92f51486f995200c29d980477__1920x1088@25fps-28q_merged.mp4 | 43.72 |
| 33 | 15/07/2025 | 16-32-05 | 268 | 4 | CS | naive | /mnt/ethoscope_data/videos/268102f92f51486f995200c29d980477/ETHOSCOPE_268/2025-07-15_16-32-05/2025-07-15_16-32-05_268102f92f51486f995200c29d980477__1920x1088@25fps-28q_merged.mp4 | 43.72 |
| 34 | 15/07/2025 | 16-32-05 | 268 | 2 | CS | naive | /mnt/ethoscope_data/videos/268102f92f51486f995200c29d980477/ETHOSCOPE_268/2025-07-15_16-32-05/2025-07-15_16-32-05_268102f92f51486f995200c29d980477__1920x1088@25fps-28q_merged.mp4 | 43.72 |
| 35 | 15/07/2025 | 16-32-05 | 268 | 5 | CS | trained | /mnt/ethoscope_data/videos/268102f92f51486f995200c29d980477/ETHOSCOPE_268/2025-07-15_16-32-05/2025-07-15_16-32-05_268102f92f51486f995200c29d980477__1920x1088@25fps-28q_merged.mp4 | 43.72 |
| 36 | 15/07/2025 | 16-32-05 | 268 | 3 | CS | trained | /mnt/ethoscope_data/videos/268102f92f51486f995200c29d980477/ETHOSCOPE_268/2025-07-15_16-32-05/2025-07-15_16-32-05_268102f92f51486f995200c29d980477__1920x1088@25fps-28q_merged.mp4 | 43.72 |
| 37 | 15/07/2025 | 16-32-05 | 268 | 1 | CS | trained | /mnt/ethoscope_data/videos/268102f92f51486f995200c29d980477/ETHOSCOPE_268/2025-07-15_16-32-05/2025-07-15_16-32-05_268102f92f51486f995200c29d980477__1920x1088@25fps-28q_merged.mp4 | 43.72 |