Giorgio Gilestro
f60a9d0530
- Tracked DBs now live at /mnt/data/projects/cupido/tracked/ (out of
ownCloud to avoid sync conflicts and bandwidth churn). config.py
TRACKING_OUTPUT_DIR points there; the docker-compose for ethoscope-lab
mounts it world-readable for JupyterHub users.
- New scripts/export_video_db_index.py joins all_video_info_merged.xlsx
with the video inventory and the on-disk DBs, producing a TSV that has
one row per fly/ROI plus training/testing video and DB paths. Handles
approximate xlsx times, cross-day training/testing, the 12 AM/PM
ambiguity, and date typos.
- scripts/load_roi_data.py rewritten as a TSV-driven loader returning a
single DataFrame with session and metadata columns. calculate_distances
and the two flies_analysis notebooks migrated to use it; downstream
trained/naive splits remain available via simple equality filters.
- Metadata vocabulary canonicalized: {naïve, niave, untrained, test} all
resolve to {trained, naive}. Normalization happens at the TSV-export
boundary (idempotent); the xlsx and the 2025-07-15 legacy CSV were
edited in place to remove the worst variants.
- scripts/monitor_tracking.py rate calculation fixed: with N parallel
workers, completions arrive in bursts; the old formula divided by burst
width and reported nonsense rates. Now uses a 6 h window denominator.
- scripts/track_videos.py: BGRMovieCamera retries cv2.read on transient
NFS hiccups and a post-tracking completeness gate (≥ 90 % of expected
duration via MAX(t) across all 6 ROIs) deletes silent partial DBs.
Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
38 lines
546 B
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38 lines
546 B
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# Large data files (reproducible from raw DBs)
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data/raw/*.db
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data/processed/*.csv
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# Offline-tracking outputs (regenerable from videos + target JSONs)
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# DBs live outside the repo at /mnt/data/projects/cupido/tracked/
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data/targets/*.json
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data/metadata/video_inventory.csv
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data/logs/*.log
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# Generated figures (reproducible from scripts)
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figures/*.png
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# Python
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__pycache__/
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*.py[cod]
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*$py.class
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*.so
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.venv/
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venv/
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env/
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*.egg-info/
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dist/
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build/
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# Jupyter
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.ipynb_checkpoints/
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# IDE
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.vscode/
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.idea/
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# OS
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.DS_Store
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Thumbs.db
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# Claude Code
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.claude/
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