Giorgio Gilestro
231c7a437f
Notebooks now use Path.home() / "cupido" for the repo root (works for any user inside the JupyterLab container), and the offline-tracking scripts read the ethoscope source-tree location from the new ETHOSCOPE_SRC config constant — defaulting to ~/Code/ethoscope_project/... and overridable via the ETHOSCOPE_SRC environment variable. Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com> |
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| .. | ||
| 00_welcome.ipynb | ||
| 01_python_pandas_basics.ipynb | ||
| 02_explore_one_database.ipynb | ||
| 03_compare_trained_vs_naive.ipynb | ||
| README.md | ||
Tutorial notebooks
Read these in order:
00_welcome.ipynb— what's the project, where the data lives, how to use a Jupyter notebook.01_python_pandas_basics.ipynb— minimum Python and pandas you need to read project code.02_explore_one_database.ipynb— open one tracking DB, plot a trajectory, compute a single distance.03_compare_trained_vs_naive.ipynb— first real analysis, comparing groups.
After these, the notebooks one level up (flies_analysis*.ipynb) walk
through the full analysis pipeline that the previous student built.