Add per-row include flag to TSV; expand flies_analysis_simple narrative
- export_video_db_index.py now writes a boolean `include` column (default True). Flip it to False to drop a noisy/unusable row from analysis without deleting it. - load_roi_data filters on `include` automatically (back-compat: missing column = load everything). - flies_analysis_simple.ipynb section headers now explain *why* each step exists (barrier alignment, body-area baseline, merged-blob heuristic, Hungarian identity tracking) rather than just naming the step. Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
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4 changed files with 25 additions and 29 deletions
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@ -165,6 +165,12 @@ def main() -> None:
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df["testing_video_path"] = test_videos
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df["testing_db_path"] = test_dbs
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# Reason: an analyst flag for excluding individual fly/session rows that
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# turn out to be too noisy or otherwise unusable. Default True; flip to
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# False directly in the TSV to drop a row from analysis without having
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# to delete it. load_roi_data() respects this flag.
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df["include"] = True
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df.to_csv(args.out, sep="\t", index=False)
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n_rows = len(df)
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