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Remove hardcoded /home/gg paths so the project is portable

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Notebooks now use Path.home() / "cupido" for the repo root (works for
any user inside the JupyterLab container), and the offline-tracking
scripts read the ethoscope source-tree location from the new
ETHOSCOPE_SRC config constant — defaulting to ~/Code/ethoscope_project/...
and overridable via the ETHOSCOPE_SRC environment variable.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
This commit is contained in:
Giorgio Gilestro 2026-05-01 08:55:44 +01:00
parent 5934dce21e
commit 231c7a437f
8 changed files with 25 additions and 14 deletions
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2
notebooks/flies_analysis_simple.ipynb
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@ -14,7 +14,7 @@
"execution_count": null,
"metadata": {},
"outputs": [],
"source": "import sys\nfrom pathlib import Path\n\nimport pandas as pd\nimport numpy as np\nimport matplotlib.pyplot as plt\nimport seaborn as sns\nfrom scipy.spatial.distance import euclidean\nfrom scipy import stats\n\n# Two locations to know about:\n# - DATA_DIR : where the project's bulky data lives (data volume)\n# - REPO_ROOT : where the code repository lives (this notebook is inside it)\nDATA_DIR = Path(\"/mnt/data/projects/cupido\")\nREPO_ROOT = Path(\"/home/gg/ownCloud/Work/Projects/coding/cupido/tracking\")\n\n# Pull every other path constant from scripts/config.py so this notebook\n# stays in sync with the rest of the codebase. (Reason: avoids drift when\n# paths change — config.py is the single source of truth.)\nsys.path.insert(0, str(REPO_ROOT / \"scripts\"))\nfrom config import DATA_RAW, DATA_METADATA, DATA_PROCESSED, FIGURES\n\n# Plotting style\nplt.style.use('seaborn-v0_8')\nsns.set_palette(\"husl\")\n\nprint(f\"Data directory: {DATA_DIR}\")\nprint(f\"Repo root: {REPO_ROOT}\")\nprint(f\"Pandas version: {pd.__version__}\")\nprint(f\"NumPy version: {np.__version__}\")\n"
"source": "import sys\nfrom pathlib import Path\n\nimport pandas as pd\nimport numpy as np\nimport matplotlib.pyplot as plt\nimport seaborn as sns\nfrom scipy.spatial.distance import euclidean\nfrom scipy import stats\n\n# Two locations to know about:\n# - DATA_DIR : where the project's bulky data lives (mounted into the container)\n# - REPO_ROOT : where the code repository is checked out (your home directory)\n# Path.home() expands to the current user's home, so this works for any\n# user running the container (no hard-coded usernames).\nDATA_DIR = Path(\"/mnt/data/projects/cupido\")\nREPO_ROOT = Path.home() / \"cupido\"\n\n# Pull every other path constant from scripts/config.py so this notebook\n# stays in sync with the rest of the codebase. (Reason: avoids drift when\n# paths change — config.py is the single source of truth.)\nsys.path.insert(0, str(REPO_ROOT / \"scripts\"))\nfrom config import DATA_RAW, DATA_METADATA, DATA_PROCESSED, FIGURES\n\n# Plotting style\nplt.style.use('seaborn-v0_8')\nsns.set_palette(\"husl\")\n\nprint(f\"Data directory: {DATA_DIR}\")\nprint(f\"Repo root: {REPO_ROOT}\")\nprint(f\"Pandas version: {pd.__version__}\")\nprint(f\"NumPy version: {np.__version__}\")\n"
},
{
"cell_type": "markdown",