MachineSex/paper/manuscript/cover_letter_nmi.md
Giorgio Gilestro ab3dc10587 Restructure: descriptive tier and experiment names, paper/manuscript
- paper/pnas -> paper/manuscript (venue-neutral)
- configs/layer1 -> configs/inheritance, src/knowledge -> src/inheritance
  (imported as `inheritance`), make layer1 -> make inheritance; layer2 alias dropped
- inheritance and trained-network bundles named after the manuscript figure
  they feed (fig2_grounding_sweep, figS3_rebaselining, ...), or descriptively
  where they feed none; configs keep their `experiment:` value so parquet
  hashes are unchanged, only output.dir moves
- figure scripts, SI figure sources, notebooks, REPRODUCING.md, README and the
  SI Methods/tables updated; make clean no longer deletes tracked manifests;
  reproduce.sh hashes the s{seed}/ layouts too

Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01Y64o8FKP7rCuXzC48pxpMm
2026-09-13 17:00:40 +01:00

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Giorgio F. Gilestro
Department of Life Sciences, Imperial College London
giorgio@gilest.ro
[Date]
Dear Editor,
Please consider the enclosed manuscript, "The evolution of sex for artificial intelligence: a population-genetic framework for multigenerational model populations", for publication as an Article in *Nature Machine Intelligence*.
Machine learning has become a population process. Public repositories hold millions of models, most of them fine-tunes, distillations or weight merges of a few ancestors; models learn from the output of earlier models; and merging, now mainstream practice with standard tooling, is described in its own literature with the words crossover, mutation and mate choice. A population whose members inherit from one another, recombine and retransmit is an evolving population in the technical sense, and the branch of biology built for that situation is the population genetics of sexual reproduction. That training on model output is genetic drift, with model collapse as its signature, has been established several times over. This paper takes the next step and develops the mechanisms population genetics offers for sustaining a population against drift (immigration, recombination, selection, population structure), and the point where they fail (reproductive isolation), and tests each of them in a chain from closed forms to trained networks to language models.
Four measurements are new, and each was chosen because the existing experimental designs could not make it.
First, a six-generation population of language models in which three lineages each learn a new skill every generation and then choose whether, and with whom, to merge. Merging has been iterated before, in evolutionary pools of fixed parents and in continual streams folded into one model, but never while the lineages were also learning. The population shows that obligate merging collapses once partners hold conflicting conventions (accuracy 0.65 to 0.27), that a merge each lineage may decline, or a fixed early stop, avoids the collapse at no cost against never merging, and that merging with one's own ancestor is safer than merging with a contemporary in every seed. A second curriculum decoupling partner complementarity from generation shows that declines track generation, which corrects an interpretation the first curriculum invited.
Second, model speciation as a named and tested question. Using the permutation-and-rescaling alignment of Git Re-Basin and REPAIR, the merge barrier between networks is separated into the part alignment removes and the part it cannot. Conflicting label maps leave a residual alignment does not touch, while six times the base training on non-conflicting tasks produces no isolation at all and the strongest rescue-by-merging in the paper, against the expectation that specialisation by itself erodes mergeability.
Third, a pre-merge predictive test on 39 language-model parent pairs across three decorrelated axes (conflict, compatible overlap, duration). Functional disagreement between parents predicts merge damage out of sample where LoRA-weight cosine and distance do not, in agreement with recent correlational reports. The control that matters is new: on a grid that varies conflict and shared training data together, weight cosine is the best predictor (ρ = 0.60), and adding overlap without conflict collapses it to 0.03. Any weight-geometry predictor validated on such a grid is reading the shared data, which bears on the merge-prediction literature independently of the biology.
Fourth, a conservation law for blending inheritance. Refitting a child on the average of several parents' outputs carries a rare capability across a generation no better than inheriting from one parent, to first order, so the gain of having several parents is realised only by operators that keep each parent's strongest contribution. The law fixes the null against which every recombination operator is judged and predicted the headroom rule measured in language models at two scales: routing and offspring selection beat the weight average wherever that average falls short of attainable performance (hard tasks at 7B, every seed), and add nothing where it does not.
Around these sit results that place the framework in the existing literature: a closed-form grounding equilibrium and per-item floor that agree with the fresh-data stability theorems and with the finding that absolute real-sample counts matter more than proportions; the transfer of every drift sign to trained networks with a measured, architecture-specific estimator bias; and a four-arm ablation of a composed population. Two refinements the framework proposed were not supported, and the paper says so.
I am submitting to *Nature Machine Intelligence* because the readers who make the decisions this paper prices (how much verified data a synthetic pipeline needs, whether to merge or route, when to stop merging, how to detect an incompatible pair before paying for the merge) are this journal's readers, and because the journal has already published evolutionary model merging as a research direction (Akiba et al., 2025). The paper gives that direction its theory and its failure modes. What biology receives in return is a model system where every genotype, environment and mating decision is observable and manipulable, so the paper should also interest the evolutionary biologists among your readership.
All code, configurations, seeds, results artefacts and a one-command reproduction script will be deposited openly with an archived DOI on publication; every figure regenerates from committed artefacts without re-simulation. The manuscript is not under consideration elsewhere and has not been published in any form. [A preprint has been / will be posted to arXiv.] I am the sole author and declare no competing interests.
Suggested referees:
- [Name, affiliation, email] (model merging)
- [Name, affiliation, email] (model collapse / synthetic data theory)
- [Name, affiliation, email] (population genetics of recombination and speciation)
- [Name, affiliation, email] (continual learning)
Excluded referees: [none / names].
Yours sincerely,
Giorgio F. Gilestro