Giorgio Gilestro
ab3dc10587
- paper/pnas -> paper/manuscript (venue-neutral)
- configs/layer1 -> configs/inheritance, src/knowledge -> src/inheritance
(imported as `inheritance`), make layer1 -> make inheritance; layer2 alias dropped
- inheritance and trained-network bundles named after the manuscript figure
they feed (fig2_grounding_sweep, figS3_rebaselining, ...), or descriptively
where they feed none; configs keep their `experiment:` value so parquet
hashes are unchanged, only output.dir moves
- figure scripts, SI figure sources, notebooks, REPRODUCING.md, README and the
SI Methods/tables updated; make clean no longer deletes tracked manifests;
reproduce.sh hashes the s{seed}/ layouts too
Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01Y64o8FKP7rCuXzC48pxpMm
37 lines
2.3 KiB
Markdown
37 lines
2.3 KiB
Markdown
# Zotero library for the manuscript's references
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`Evolution of sex for AI.ris` — all 80 references from `paper/manuscript/main.md`, with metadata
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fetched from the publisher of record rather than retyped.
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**To import:** Zotero → File → Import… → choose this file → keep "Place imported collections and
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items into new collection" ticked. The collection takes its name from the file, so rename the file
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first if you want a different folder name.
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## How it was built
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`build_zotero_library.py` (run from the repo root) parses the numbered reference list, resolves a DOI
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for each entry, and fetches authoritative metadata by content negotiation against doi.org, which
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serves both Crossref and DataCite records. Each Zotero item carries its manuscript reference number
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in the Extra/Notes field, so an item can be traced back to its citation.
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- **77 of 80 resolved from a DOI.** 53 DOIs were already printed in the manuscript; the rest were
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found by Crossref title search, accepted only when the returned title actually matched (a plain
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relevance score is not enough — Crossref answers confidently for pre-DOI works).
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- **2 needed a hand-verified DOI:** ref 17 (Brinkmann et al., *Machine culture*), where the search
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returned a different paper with a near-identical title, and ref 64 (Schwarz et al., *Progress &
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Compress*), a PMLR paper with no Crossref DOI, cited by its arXiv DOI instead.
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- **3 genuinely predate DOIs** and are written out by hand in the script: Jenkin 1867, Fisher 1930
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(book), Templeton 1986 (book chapter).
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`resolution-report.tsv` records the outcome and source for every entry.
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`references.csl.json` is the same library as CSL-JSON, for any tool that prefers it.
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## Notes on the records
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arXiv DOIs come back from DataCite uppercased and with no venue; the script restores the canonical
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`10.48550/arXiv.NNNN` casing and sets the publication to *arXiv* with the identifier in the archive
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field, so those items do not import as untitled journal articles. Publisher abstracts arrive wrapped
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in JATS markup with HTML entities and hard line breaks, all of which are stripped — RIS is
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line-oriented, and an unescaped abstract silently corrupts the record that follows it.
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Re-run the script after any change to the reference list; it is a pure function of `main.md`.
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