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Giorgio Gilestro 6f8cef1ac5 main: keep only what reproduces the manuscript; everything else lives on dev 
Removed from main (all preserved on the dev branch): the arXiv build and
its sources, design documents (blueprint, results summary, review responses,
essay drafts), tasks/ and CLAUDE.md, the cover letter and reference tooling,
two unused manuscript figures, and every experiment that feeds no figure or
number in the paper: the collapse null, the sexual-vs-asexual lineage, the
NK speciation variant, the 0.5B single-seed LLM prototypes, the compose and
society experiments with their calibration and pilot runs, and their
configs, runners, tests, figure scripts and PBS jobs. Their result bundles
are moved to results/_archive/ (ignored) so the parquets stay on disk.

Also: plot_llm_speciation reads the s{seed}/ layout; the mating-breadth
plot writes under its bundle name; Makefile targets reduced to the kept
experiments; REPRODUCING.md and README point to dev for the rest.

Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01Y64o8FKP7rCuXzC48pxpMm
2026-09-13 17:07:23 +01:00
..
_figlib.py Manuscript revision and pending experiment work, snapshot before restructuring 2026-09-13 16:54:09 +01:00
mnist_montage.py Restructure: descriptive tier and experiment names, paper/manuscript 2026-09-13 17:00:40 +01:00
plot_bridge.py Restructure: descriptive tier and experiment names, paper/manuscript 2026-09-13 17:00:40 +01:00
plot_collapse.py Restructure: descriptive tier and experiment names, paper/manuscript 2026-09-13 17:00:40 +01:00
plot_curriculum_cull.py Manuscript revision and pending experiment work, snapshot before restructuring 2026-09-13 16:54:09 +01:00
plot_curriculum_timing.py Manuscript revision and pending experiment work, snapshot before restructuring 2026-09-13 16:54:09 +01:00
plot_fig2_grounding_sweep.py Restructure: descriptive tier and experiment names, paper/manuscript 2026-09-13 17:00:40 +01:00
plot_fig2_mnist_collapse.py Restructure: descriptive tier and experiment names, paper/manuscript 2026-09-13 17:00:40 +01:00
plot_fig4_society_ablation.py Restructure: descriptive tier and experiment names, paper/manuscript 2026-09-13 17:00:40 +01:00
plot_fig5_speciation_bdm.py main: keep only what reproduces the manuscript; everything else lives on dev 2026-09-13 17:07:23 +01:00
plot_figS1_architectures.py Restructure: descriptive tier and experiment names, paper/manuscript 2026-09-13 17:00:40 +01:00
plot_figS3_rebaselining.py Restructure: descriptive tier and experiment names, paper/manuscript 2026-09-13 17:00:40 +01:00
plot_figS5_aimed_grounding.py Restructure: descriptive tier and experiment names, paper/manuscript 2026-09-13 17:00:40 +01:00
plot_figS6_grounding_rnn.py Restructure: descriptive tier and experiment names, paper/manuscript 2026-09-13 17:00:40 +01:00
plot_figS8_multiparent_union.py Restructure: descriptive tier and experiment names, paper/manuscript 2026-09-13 17:00:40 +01:00
plot_figS9_specialist_superparent.py Restructure: descriptive tier and experiment names, paper/manuscript 2026-09-13 17:00:40 +01:00
plot_figS10_rugged_landscapes.py Restructure: descriptive tier and experiment names, paper/manuscript 2026-09-13 17:00:40 +01:00
plot_figS11_directed_recombination.py Restructure: descriptive tier and experiment names, paper/manuscript 2026-09-13 17:00:40 +01:00
plot_figS12_quality_diversity.py Restructure: descriptive tier and experiment names, paper/manuscript 2026-09-13 17:00:40 +01:00
plot_figS13_mating_breadth.py main: keep only what reproduces the manuscript; everything else lives on dev 2026-09-13 17:07:23 +01:00
plot_kernel.py Restructure: descriptive tier and experiment names, paper/manuscript 2026-09-13 17:00:40 +01:00
plot_llm_epistasis.py second review round: tempered claims, robust statistics, corrected technical statements 2026-09-06 17:55:46 +01:00
plot_llm_seeds.py Manuscript revision and pending experiment work, snapshot before restructuring 2026-09-13 16:54:09 +01:00
plot_llm_smol.py Manuscript revision and pending experiment work, snapshot before restructuring 2026-09-13 16:54:09 +01:00
plot_llm_speciation.py main: keep only what reproduces the manuscript; everything else lives on dev 2026-09-13 17:07:23 +01:00
plot_recombination.py neural: grounding refinement + all five Layer-1.5 figures 2026-07-05 08:14:19 +01:00
plot_speciation_real.py E13b/c: harden real-weight speciation — full symmetry group + emergent-divergence null 2026-09-06 12:35:14 +01:00
stats_llm_7b_seeds.py Manuscript revision and pending experiment work, snapshot before restructuring 2026-09-13 16:54:09 +01:00
stats_llm_curriculum.py main: keep only what reproduces the manuscript; everything else lives on dev 2026-09-13 17:07:23 +01:00
stats_llm_epistasis.py third review round: mathematical corrections + operator separation + headline calibration 2026-09-06 19:29:09 +01:00
stats_llm_smol.py Manuscript revision and pending experiment work, snapshot before restructuring 2026-09-13 16:54:09 +01:00
stats_llm_speciation_seeds.py Manuscript revision and pending experiment work, snapshot before restructuring 2026-09-13 16:54:09 +01:00