"Model" is reserved for AI models in this paper, so a tier named "Exact
model" read as a kind of AI model; the tier is the Wright-Fisher theory run
exactly. Caption and Introduction adjusted to match ("three tiers" rather
than "three tiers of model architecture"; "an exact population-genetic
simulator").
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01BkRLcc18rwT2Lysu6PbG7v
Row labels now teach the vocabulary (grounding = immigration, recombination =
sex, epistasis, the composed society, speciation = reproductive isolation),
each with a two-to-three-line definition in the left margin, replacing the
question taglines. The in-figure title/arrow is removed (the caption carries
it); the tier header row is now solid-colour with white text so the
model-nature band reads as a header rather than a content row.
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01BkRLcc18rwT2Lysu6PbG7v
Replaces the results table with a pipeline figure: five questions x three
architecture tiers (exact Wright-Fisher simulator, trained networks, language
models), filled cells naming the experiments, dashed cells the honest gaps.
Table 1 (the dictionary) stays; Table 2 moves to SI Appendix Table S2. The
renumber surfaced a pre-existing citation-order violation (the LLM figure was
cited in the recombination section before Figs. 3-6), so figures are renumbered
to strict first-citation order (LLM tier is now Fig. 3). Fig. 2B: the montage's
baked-in raster labels are cropped away and replaced with vector row numbers
under a rotated "generation" header.
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01BkRLcc18rwT2Lysu6PbG7v
paper/pnas/main.md — the manuscript restructured as a research article
(~5.6k words main text): significance statement, abstract, introduction
(diagnosis conceded; the management thesis; the interpretation/
explanation/prediction ladder with the prediction rung stated as a
bounded controlled test), the minimal model with its exactness boundary
(learning kernel cited against ourselves), Table 1 dictionary with
per-row support levels, a five-step results ladder (grounding floor;
conservation law + operator boundaries + Fisher-Muller + directed sex +
mating structure; the jointly-necessary society; speciation across three
tiers with the emergent null; the controlled predictive test at
second-review calibration), discussion (design rules, borrowed-vs-ours
ledger, limits with the reviewer's generalisation-before-scale ordering,
what biology gets back), brief methods, 30 references.
build.py composes 6 figures by stacking committed vector PDFs (bespoke
unified re-plots deferred to submission polish); builds clean under
tectonic (15 pp incl. 6 full-page figures). si.md: SI skeleton
(propositions, claims ledger, per-tier methods, statistics, figure
list). Manifesto sections of v6 (institutions, timescales, re-minting)
compressed into Discussion per the plan; v6 remains the long-form
perspective document.
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01BkRLcc18rwT2Lysu6PbG7v
