MachineSex

giorgio/MachineSex

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6f8cef1ac5 main: keep only what reproduces the manuscript; everything else lives on dev main Giorgio Gilestro 2026-09-13 17:07:23 +01:00
ab3dc10587 Restructure: descriptive tier and experiment names, paper/manuscript dev Giorgio Gilestro 2026-09-13 17:00:40 +01:00
84124de143 Manuscript revision and pending experiment work, snapshot before restructuring Giorgio Gilestro 2026-09-13 16:54:09 +01:00
e4804adabc SI: adopt the clearer rewrite, with factual corrections; fix two build bugs it exposed Giorgio Gilestro 2026-09-07 17:13:02 +01:00
a88289964a SI Methods: a full experimental-procedures appendix Giorgio Gilestro 2026-09-07 16:04:52 +01:00
c435cfba6e Reproducibility pass: figure map, one-command reproduce.sh, notebooks, Makefile gaps Giorgio Gilestro 2026-09-07 15:50:50 +01:00
8086504f44 llm_society campaign: 4 seed-configs (N=8, G=10, 4 arms) + CX3 PBS array Giorgio Gilestro 2026-09-07 13:59:32 +01:00
9e83aa7034 llm_society pilot v2: the contrast is alive — grounded society climbs, ungrounded decays Giorgio Gilestro 2026-09-07 13:49:51 +01:00
70c8c54434 Fig. 1: borderless cells in A; the Flaticon robot everywhere in B Giorgio Gilestro 2026-09-07 13:48:25 +01:00
60ef253c77 Fig. 1A: wrap the two long header subtitles inside their boxes Giorgio Gilestro 2026-09-07 13:44:30 +01:00
40ad268c6d Fig. 1A: double the icon size (56 px placed; taller header row to fit) Giorgio Gilestro 2026-09-07 13:41:38 +01:00
438931d67b Fix icon resolution: imshow + interpolation="none" embeds icons unsampled Giorgio Gilestro 2026-09-07 13:37:53 +01:00
c9c4d927ad Fig. 1A icons: committed SVGs rasterised at build time; CDN PNGs removed Giorgio Gilestro 2026-09-07 13:27:25 +01:00
9055fca792 Fig. 1A: pastel palette (green biology, two blues for AI) + Mendel peas and robot icons Giorgio Gilestro 2026-09-07 13:23:35 +01:00
2d8f661924 Paper-wide rename: the pop-gen construct is "the biological model"; "(exact)" dropped Giorgio Gilestro 2026-09-07 13:08:58 +01:00
f1970728cf Fig. 1B: information-flow taglines under each panel Giorgio Gilestro 2026-09-07 13:03:41 +01:00
3a41ee0c2e Fig. 1B polish: larger text, no overlaps, speech bubble says hi Giorgio Gilestro 2026-09-07 12:59:59 +01:00
b417a66c23 Fig. 1B: the conceptual cartoon — from a society in space to a society in time Giorgio Gilestro 2026-09-07 12:50:36 +01:00
9c0210ba93 llm_society pilot v1 diagnosis + v2 knobs: raise inheritance fidelity, add elitism Giorgio Gilestro 2026-09-07 12:38:15 +01:00
16e9002773 Fig. 1 doubles as a map of the paper: per-cell figure/panel tags Giorgio Gilestro 2026-09-07 12:10:51 +01:00
9b0ca32f51 llm_society: the composed society at LLM scale (C3) — loop, tests, smoke green Giorgio Gilestro 2026-09-07 11:55:19 +01:00
d75c58474a Fig. 1: "not tested at this tier" -> "adds no discriminating test at this tier" Giorgio Gilestro 2026-09-07 11:39:55 +01:00
e9fb28d8c4 Fig. 1: colour-separate theory from AI tiers; explain every empty cell Giorgio Gilestro 2026-09-07 11:35:59 +01:00
5cb49943db Fig. 1: rename first tier "Exact model" -> "Population genetics (exact)" Giorgio Gilestro 2026-09-07 11:31:56 +01:00
e42fe497ff Fig. 1 revision: pop-gen definitions as row labels, title into the caption, solid header row Giorgio Gilestro 2026-09-07 11:21:06 +01:00
0159e2839a New Fig. 1 (experimental-programme schematic); Table 2 to SI; figures in citation order; Fig. 2B legible labels Giorgio Gilestro 2026-09-07 11:12:33 +01:00
073fc33509 Accessibility pass: introduce every pop-gen term at first use, with real-world anchors Giorgio Gilestro 2026-09-07 10:58:46 +01:00
cc27522270 Discussion: creative diversity — stylistic collapse and the evolutionary remedy Giorgio Gilestro 2026-09-07 10:46:58 +01:00
6325286a0e style: remove herald sentences (announcer claudisms) Giorgio Gilestro 2026-09-07 10:38:46 +01:00
e2b398c897 voice: first-person singular for single authorship Giorgio Gilestro 2026-09-07 10:29:54 +01:00
d58f1c7ee6 intro: thesis sentence recast from perspective-claim to motivation + activity Giorgio Gilestro 2026-09-07 10:27:28 +01:00
612be58433 introduction rewritten: setting, diagnosis, question — nothing else Giorgio Gilestro 2026-09-07 10:20:00 +01:00
02ff327b58 lessons: note promotion of the reader-facing-prose rule to global CLAUDE.md Giorgio Gilestro 2026-09-07 10:14:03 +01:00
f82d11ccce narrative: remove internal-deliberation ghosts from the diagnosis passages Giorgio Gilestro 2026-09-07 10:03:28 +01:00
e2981c845d narrative: make the intellectual contribution explicit Giorgio Gilestro 2026-09-07 09:20:21 +01:00
aaa146863f typography: remove bold-for-emphasis from the main text (PNAS convention) Giorgio Gilestro 2026-09-07 09:13:30 +01:00
96902e87f0 figures: publication-ready — unified, lettered, codename-free Giorgio Gilestro 2026-09-07 09:09:46 +01:00
6f1f8bf172 references: citation-order renumbering, PNAS style, full verification Giorgio Gilestro 2026-09-07 09:00:56 +01:00
543cbe3e45 format compliance + de-claudism pass Giorgio Gilestro 2026-09-06 22:50:24 +01:00
e1532abb4b narrative revision: substantiated premise, continual-learning positioning, convergence framing Giorgio Gilestro 2026-09-06 20:15:40 +01:00
6b5591c92f third review round: mathematical corrections + operator separation + headline calibration Giorgio Gilestro 2026-09-06 19:29:09 +01:00
bf4b1c077c Phase 4: PNAS research-article draft (main.md + composed figures + SI skeleton) Giorgio Gilestro 2026-09-06 18:24:58 +01:00
a40ace1821 second review round: tempered claims, robust statistics, corrected technical statements Giorgio Gilestro 2026-09-06 17:55:46 +01:00
1ae950cb7c paper: response to the external review + the last outstanding fix Giorgio Gilestro 2026-09-06 17:31:36 +01:00
287d2326cc epistasis_predicts: functional conflict, not weight geometry, predicts merge failure pre-merge Giorgio Gilestro 2026-09-06 17:19:46 +01:00
5a23ddaf2a Phase 3: LLM-tier speciation + multi-seed firm-up of the recombination claims Giorgio Gilestro 2026-09-06 15:39:15 +01:00
58e6c74609 paper: claim-narrowing revision from the external review Giorgio Gilestro 2026-09-06 15:14:28 +01:00
d6a5c5cacd paper (Phase 2): fold hardened E13 into both versions, citation refresh, arXiv package Giorgio Gilestro 2026-09-06 12:49:52 +01:00
ea051a5f92 E13b/c: harden real-weight speciation — full symmetry group + emergent-divergence null Giorgio Gilestro 2026-09-06 12:35:14 +01:00
72d5e9e736 tasks: open the PNAS submission campaign (work order + plan) Giorgio Gilestro 2026-09-06 12:34:59 +01:00
f5f68f5249 E14: mating systems — monogamy vs promiscuity (mate-pool breadth) Giorgio Gilestro 2026-07-09 12:38:50 +01:00
9fea375ff8 paper: add plain-language parallel version for a basic-ML reader Giorgio Gilestro 2026-07-09 09:04:58 +01:00
b950ea37e4 paper (v6): fold E13 real-weight speciation into the limit-of-sex section Giorgio Gilestro 2026-07-09 09:04:45 +01:00
01d87e504f E13: real-weight model speciation — the Git Re-Basin residual confirms E12 Giorgio Gilestro 2026-07-09 00:19:04 +01:00
56f642e7f9 paper: v6 'The Evolution of Sex for AI' + fold in E12 model speciation as headline Giorgio Gilestro 2026-07-08 22:41:53 +01:00
db9452c9d4 E12: model speciation — the merge-compatibility limit of the sexual society Giorgio Gilestro 2026-07-08 22:40:02 +01:00
ae1779a9a8 specialise: extract train_lora_on_tasks — reusable answer-only SFT primitive Giorgio Gilestro 2026-07-05 20:27:53 +01:00
4e86d8b602 papers: consolidate the real-LLM recombination arc (merge/moe/directed + headroom law) Giorgio Gilestro 2026-07-05 19:20:19 +01:00
39f6c9f4df hard benchmark: the 7B "fusion wins / no headroom" results were saturation artefacts Giorgio Gilestro 2026-07-05 19:13:26 +01:00
e433e48860 llm_directed: directed sex (breed offspring + select on verifier) — E10 in real weights Giorgio Gilestro 2026-07-05 18:35:04 +01:00
8da0dac007 llm_moe: the union operator (route/max-merge) vs fusion — and the regime flips at scale Giorgio Gilestro 2026-07-05 17:53:47 +01:00
585264d0b4 llm_merge_hpc: the 7B firm-up makes the Fisher-Muller sign decisive Giorgio Gilestro 2026-07-05 17:32:51 +01:00
38bb252c20 hpc: PBS job scripts for Imperial CX3 (probe + scaled LLM merge run) Giorgio Gilestro 2026-07-05 16:02:09 +01:00
809e45a5e0 llm: first real-LLM prototype — recombining specialist LLMs (C2/C4) Giorgio Gilestro 2026-07-05 15:48:02 +01:00
6bca1db61e paper: reframe the perspective paper around sexual reproduction (v4 -> v5) Giorgio Gilestro 2026-07-05 13:53:10 +01:00
bab81d3178 paper: expand results summary to the full study Giorgio Gilestro 2026-07-05 13:47:44 +01:00
0f7b775ae5 society: the dynamic Lamarckian society — the vertical claim (E11 / C3) Giorgio Gilestro 2026-07-05 12:34:01 +01:00
48181a1c84 society: make the sexual-transmission model rigorous (E9 epistasis, E10 directed sex) Giorgio Gilestro 2026-07-05 11:13:37 +01:00
62c68d6c8c society: multi-locus recombination frame — the vertical claim (E7/E8) Giorgio Gilestro 2026-07-05 10:51:41 +01:00
871bc39ec6 knowledge: learning kernel — model the estimator bias, not just sampling Giorgio Gilestro 2026-07-05 10:23:33 +01:00
79bbc45f41 neural: real-MNIST external-validity tier (collapse + grounding) Giorgio Gilestro 2026-07-05 09:19:36 +01:00
3b9f4f7893 docs: accessible figure legends (README.md) for all figures Giorgio Gilestro 2026-07-05 08:43:04 +01:00
b8da418034 neural: grounding refinement + all five Layer-1.5 figures Giorgio Gilestro 2026-07-05 08:14:19 +01:00
d22dd9d535 recombination: reproduce the E4 "merge, don't average" finding in real weights Giorgio Gilestro 2026-07-04 21:49:44 +01:00
aca7b394a3 Rename neural experiments to descriptive paths (drop N* codes) Giorgio Gilestro 2026-07-04 21:21:56 +01:00
840b6b00b3 Layer 1.5: architecture-general neural existence proof Giorgio Gilestro 2026-07-04 21:02:49 +01:00
1721d047fa Layer 1 complete: E3-E6 + E2 analysis add-ons Giorgio Gilestro 2026-07-04 18:54:42 +02:00
a6eb9b7512 Layer 1 core: Wright-Fisher knowledge-transmission model with E1-E2 Giorgio Gilestro 2026-07-04 18:10:18 +02:00