Giorgio Gilestro
ab3dc10587
- paper/pnas -> paper/manuscript (venue-neutral)
- configs/layer1 -> configs/inheritance, src/knowledge -> src/inheritance
(imported as `inheritance`), make layer1 -> make inheritance; layer2 alias dropped
- inheritance and trained-network bundles named after the manuscript figure
they feed (fig2_grounding_sweep, figS3_rebaselining, ...), or descriptively
where they feed none; configs keep their `experiment:` value so parquet
hashes are unchanged, only output.dir moves
- figure scripts, SI figure sources, notebooks, REPRODUCING.md, README and the
SI Methods/tables updated; make clean no longer deletes tracked manifests;
reproduce.sh hashes the s{seed}/ layouts too
Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01Y64o8FKP7rCuXzC48pxpMm
23 lines
331 B
YAML
23 lines
331 B
YAML
experiment: E12_nk
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seed: 12
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n_replicates: 15
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source_config:
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experiment: E12_nk
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kind: speciation
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seed: 12
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n_replicates: 15
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speciation:
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landscape: nk
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L: 16
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K:
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- 0
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- 2
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- 4
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- 6
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- 8
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- 10
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n_pairs: 40
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recomb_rate: 0.5
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n_offspring: 200
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output:
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dir: results/speciation_bdm_nk
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