Code and data associated with "The evolution of sex for artificial intelligence - A population-genetic framework for multigenerational model populations". Gilestro, 2026
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Giorgio Gilestro 809e45a5e0 llm: first real-LLM prototype — recombining specialist LLMs (C2/C4)
First step from toy models toward real language models, on one 16 GB GPU.
New src/llm/ package: procedural task families + exact-match verifier
(tasks.py), batched eval (evaluate.py), LoRA specialisation (specialise.py,
manual answer-only SFT), weight-space merge via peft add_weighted_adapter
(merge.py: soup = averaged deltas, ties = sign-reconciled union), runner
(experiment.py, kind llm_merge). Base Qwen2.5-0.5B-Instruct (Apache-2.0);
three disjoint hard families (lists/strings/arith); one LoRA specialist each
(~90s total).

Result (seed 1), reported honestly:
- STRONG/robust: the merges are the ONLY models competent across ALL
  families -- worst-family ~0.25 vs <0.16 for every single specialist (the
  Fisher-Muller "generalist assembled from specialists" signature, in real
  LoRA weights).
- MARGINAL: "exceeds every parent overall" is only marginal at this scale
  (soup 0.64 vs best specialist 0.63; ties 0.61 below it).
- CAVEAT VISIBLE: averaging dilutes peaks (lists specialist 0.43 -> merge
  0.26) -- Layer-1's "merge, don't average" (E4) appearing in real weights.

The pipeline works end-to-end; the balance/retention half reproduces; the
strict overall-exceeds and soup-vs-ties distinction need scale (bigger base,
more/cleaner families, seeds, a dilution-resistant / offspring-selected
merge) -- the HPC step. Env: Python 3.14 + transformers 5.13 works;
note transformers-5.x apply_chat_template returns a dict. make env-llm /
make llm; adapters under gitignored models/llm/, base in the HF cache.
figures/plot_llm_merge.py, README, tests/test_llm.py (+3, 125 green).

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
2026-07-05 15:48:02 +01:00
configs llm: first real-LLM prototype — recombining specialist LLMs (C2/C4) 2026-07-05 15:48:02 +01:00
figures llm: first real-LLM prototype — recombining specialist LLMs (C2/C4) 2026-07-05 15:48:02 +01:00
paper paper: reframe the perspective paper around sexual reproduction (v4 -> v5) 2026-07-05 13:53:10 +01:00
results llm: first real-LLM prototype — recombining specialist LLMs (C2/C4) 2026-07-05 15:48:02 +01:00
src llm: first real-LLM prototype — recombining specialist LLMs (C2/C4) 2026-07-05 15:48:02 +01:00
tasks llm: first real-LLM prototype — recombining specialist LLMs (C2/C4) 2026-07-05 15:48:02 +01:00
tests llm: first real-LLM prototype — recombining specialist LLMs (C2/C4) 2026-07-05 15:48:02 +01:00
.gitignore neural: real-MNIST external-validity tier (collapse + grounding) 2026-07-05 09:19:36 +01:00
CLAUDE.md llm: first real-LLM prototype — recombining specialist LLMs (C2/C4) 2026-07-05 15:48:02 +01:00
Makefile llm: first real-LLM prototype — recombining specialist LLMs (C2/C4) 2026-07-05 15:48:02 +01:00
pyproject.toml llm: first real-LLM prototype — recombining specialist LLMs (C2/C4) 2026-07-05 15:48:02 +01:00
README.md paper: reframe the perspective paper around sexual reproduction (v4 -> v5) 2026-07-05 13:53:10 +01:00
uv.lock Layer 1.5: architecture-general neural existence proof 2026-07-04 21:02:49 +01:00

The Lamarckian Society — Layer 1 (analytical core)

A parametric population-genetics model of knowledge transmission across generations of learning agents. Knowledge transmission is modelled literally as a WrightFisher process (not by analogy): a model's knowledge is a distribution p_t over K discrete items; a fixed true distribution p* has a rare tail; each generational step is "sample from the parent (drift) + mix in fresh real samples (grounding/immigration) + refit." Model collapse is the loss of rare alleles under drift.

See paper/blueprint.md (the normative build spec), paper/the-lamarckian-society-v5.md (the perspective paper), and paper/results-summary.md (a summary of all results).

Reproduce

Environment is a uv venv built from the committed, hash-pinned uv.lock — that lockfile is the single source of truth for "it runs" (Layer 1 is pure NumPy/SciPy and bitwise-reproducible from a seed; no container needed).

# one-time: install uv (https://astral.sh/uv)
curl -LsSf https://astral.sh/uv/install.sh | sh

uv sync                 # build .venv from uv.lock
make test               # correctness + scientific-validation tests (the spine of trust)
make layer1             # run experiments E1E6
make figures            # regenerate figures from committed results

Layout

src/knowledge/   Layer 1 package (imported as `knowledge`)
configs/layer1/  one YAML per experiment (E1..E6)
figures/         plot_EX.py — read results.parquet only
tests/           test_correctness.py + test_scientific_validation.py (analytic checks)
paper/           blueprint.md, perspective paper, figure_manifest.md
results/         written artifacts (gitignored; hashes tracked in manifest.json)