Giorgio Gilestro
ab3dc10587
- paper/pnas -> paper/manuscript (venue-neutral)
- configs/layer1 -> configs/inheritance, src/knowledge -> src/inheritance
(imported as `inheritance`), make layer1 -> make inheritance; layer2 alias dropped
- inheritance and trained-network bundles named after the manuscript figure
they feed (fig2_grounding_sweep, figS3_rebaselining, ...), or descriptively
where they feed none; configs keep their `experiment:` value so parquet
hashes are unchanged, only output.dir moves
- figure scripts, SI figure sources, notebooks, REPRODUCING.md, README and the
SI Methods/tables updated; make clean no longer deletes tracked manifests;
reproduce.sh hashes the s{seed}/ layouts too
Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01Y64o8FKP7rCuXzC48pxpMm
82 lines
1.4 KiB
YAML
82 lines
1.4 KiB
YAML
experiment: kernel_sharpen
|
|
seed: 20260705
|
|
n_replicates: 24
|
|
source_config:
|
|
experiment: kernel_sharpen
|
|
kind: lineage
|
|
seed: 20260705
|
|
n_replicates: 24
|
|
truth:
|
|
K: 30
|
|
R: 1
|
|
tail: zipf
|
|
zipf_s: 1.5
|
|
tail_threshold: 0.01
|
|
init: truth
|
|
dynamics:
|
|
n: 6000
|
|
grounding:
|
|
m: 0
|
|
policy: proportional
|
|
kernel:
|
|
reset: 0.0
|
|
temperature: 1.0
|
|
floor: 0.0
|
|
generations: 15
|
|
metrics:
|
|
kl_floor: 1.0e-09
|
|
support_eps: 1.0e-09
|
|
sweep:
|
|
- param: dynamics.kernel.temperature
|
|
values:
|
|
- 1.0
|
|
- 0.8
|
|
output:
|
|
dir: results/figS2_kernel_sharpen
|
|
grid:
|
|
- label:
|
|
temperature: 1.0
|
|
lineage_cfg:
|
|
truth:
|
|
K: 30
|
|
R: 1
|
|
tail: zipf
|
|
zipf_s: 1.5
|
|
tail_threshold: 0.01
|
|
init: truth
|
|
dynamics:
|
|
n: 6000
|
|
grounding:
|
|
m: 0
|
|
policy: proportional
|
|
kernel:
|
|
reset: 0.0
|
|
temperature: 1.0
|
|
floor: 0.0
|
|
generations: 15
|
|
metrics:
|
|
kl_floor: 1.0e-09
|
|
support_eps: 1.0e-09
|
|
- label:
|
|
temperature: 0.8
|
|
lineage_cfg:
|
|
truth:
|
|
K: 30
|
|
R: 1
|
|
tail: zipf
|
|
zipf_s: 1.5
|
|
tail_threshold: 0.01
|
|
init: truth
|
|
dynamics:
|
|
n: 6000
|
|
grounding:
|
|
m: 0
|
|
policy: proportional
|
|
kernel:
|
|
reset: 0.0
|
|
temperature: 0.8
|
|
floor: 0.0
|
|
generations: 15
|
|
metrics:
|
|
kl_floor: 1.0e-09
|
|
support_eps: 1.0e-09
|