Giorgio Gilestro
ab3dc10587
- paper/pnas -> paper/manuscript (venue-neutral)
- configs/layer1 -> configs/inheritance, src/knowledge -> src/inheritance
(imported as `inheritance`), make layer1 -> make inheritance; layer2 alias dropped
- inheritance and trained-network bundles named after the manuscript figure
they feed (fig2_grounding_sweep, figS3_rebaselining, ...), or descriptively
where they feed none; configs keep their `experiment:` value so parquet
hashes are unchanged, only output.dir moves
- figure scripts, SI figure sources, notebooks, REPRODUCING.md, README and the
SI Methods/tables updated; make clean no longer deletes tracked manifests;
reproduce.sh hashes the s{seed}/ layouts too
Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01Y64o8FKP7rCuXzC48pxpMm
29 lines
1.6 KiB
YAML
29 lines
1.6 KiB
YAML
experiment: E8
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kind: society
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seed: 20260705
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n_replicates: 40
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# (The vertical claim / Fisher-Muller — the society headline): can an offspring recombined from
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# MANY decorrelated parents be fitter than ANY parent? Each parent is a specialist: confident-
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# correct (hi) on the loci it has mastered, agnostic (~0.5) elsewhere; which loci each masters comes
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# from the exact shared-switch construction, so parent count K_T and decorrelation rho are clean
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# knobs. Deployed capability = fitness of the MODE genotype. Compare best single parent vs mean-
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# mixture ("model soup", combine-but-don't-recombine) vs sexual recombination (assemble the best
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# allele of each locus across all parents). Expect: sexual climbs to the optimum (=L, a genotype NO
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# parent had) as K_T grows and rho->0, while best-parent and average plateau far below. Unlike
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# biological sex there is no two-parent limit. Falsifier: sexual never exceeds the best parent, or
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# averaging matches sexual.
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society:
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L: 12 # loci; the optimum (all-correct) has fitness 12 and no parent possesses it
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q: 0.5 # fraction of loci each parent masters (marginal mastery)
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hi: 0.9 # correct-allele prob on a mastered locus (confident expert)
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lo: 0.45 # correct-allele prob on an unmastered locus (agnostic, slightly wrong)
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sweep:
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- param: K_T
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values: [1, 2, 3, 5, 8, 12] # number of parents (unbounded; grows the recombinant reach)
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- param: rho
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values: [0.0, 0.5, 1.0] # decorrelated -> identical parents (the control)
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output: {dir: results/figS9_specialist_superparent}
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