MachineSex/tasks
Giorgio Gilestro bf4b1c077c Phase 4: PNAS research-article draft (main.md + composed figures + SI skeleton)
paper/pnas/main.md — the manuscript restructured as a research article
(~5.6k words main text): significance statement, abstract, introduction
(diagnosis conceded; the management thesis; the interpretation/
explanation/prediction ladder with the prediction rung stated as a
bounded controlled test), the minimal model with its exactness boundary
(learning kernel cited against ourselves), Table 1 dictionary with
per-row support levels, a five-step results ladder (grounding floor;
conservation law + operator boundaries + Fisher-Muller + directed sex +
mating structure; the jointly-necessary society; speciation across three
tiers with the emergent null; the controlled predictive test at
second-review calibration), discussion (design rules, borrowed-vs-ours
ledger, limits with the reviewer's generalisation-before-scale ordering,
what biology gets back), brief methods, 30 references.

build.py composes 6 figures by stacking committed vector PDFs (bespoke
unified re-plots deferred to submission polish); builds clean under
tectonic (15 pp incl. 6 full-page figures). si.md: SI skeleton
(propositions, claims ledger, per-tier methods, statistics, figure
list). Manifesto sections of v6 (institutions, timescales, re-minting)
compressed into Discussion per the plan; v6 remains the long-form
perspective document.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01BkRLcc18rwT2Lysu6PbG7v
2026-09-06 18:24:58 +01:00
..
lessons.md epistasis_predicts: functional conflict, not weight geometry, predicts merge failure pre-merge 2026-09-06 17:19:46 +01:00
todo.md tasks: open the PNAS submission campaign (work order + plan) 2026-09-06 12:34:59 +01:00
workorder-E2-analysis-addons.md Layer 1 complete: E3-E6 + E2 analysis add-ons 2026-07-04 18:54:42 +02:00
workorder-pnas-submission.md Phase 4: PNAS research-article draft (main.md + composed figures + SI skeleton) 2026-09-06 18:24:58 +01:00