MachineSex/results
Giorgio Gilestro 6b5591c92f third review round: mathematical corrections + operator separation + headline calibration
The five priority fixes, in the PNAS draft and propagated to the
long-form document and results documentation:

1. The averaging proposition now proves what it claims: a FIRST-ORDER
   cancellation of the multi-parent retention gain under output-mean
   inheritance in the rare-item regime (n·p/K << 1), with the convexity
   boundary stated (averaging's variance reduction can reduce extinction
   outside that regime — the reviewer's argument) and the union
   operator's renormalisation + oracle requirement explicit. "Adding
   parents cannot help" deleted everywhere.
2. Grounding: g*~=0.05 restated as an operational threshold (equilibrium
   smooth in g — no phase transition); m·p floor restated as
   1−exp(−m·p) per-batch observation probability with
   retention/occupancy/reintroduction distinguished; the deep-tail rule
   de-categoricalised (stratified sampling; recombination recovers only
   what parents retain).
3. Grounded INHERITANCE (data channel) separated from grounded
   EVALUATION (fitness channel) in the society section; retitled to
   "complementary contributions"; general joint necessity disclaimed.
   Table 1 + v6 ledger updated.
4. Alignment contradiction removed everywhere ("cannot be an alignment
   failure" -> the reviewer's formulation); abstract says "remaining
   after permutation-and-rescaling alignment"; group = search space,
   control recovery != global optimality; "specialisation is merge-safe"
   -> "do not treat divergence/specialisation alone as evidence of
   incompatibility".
5. Significance headline matched to the bounded evidence; seed-
   dependence sensitivity added (per-seed rho stable +0.37..+0.53 for
   functional measures, ~0 for geometry, gradient alignment
   seed-UNSTABLE −0.11..−0.55 — reported as its own caveat; LOSO ranges
   in stats script).

Presentation: review-process meta-language stripped; "exact" reserved
for closed forms ("analytic model" labels); headroom rule qualitative;
directed-sex phrasing per review; ratchet = consequence-level
correspondence; compact results table (Table 2) added. Response letter:
paper/response-to-review-3.md. Both PDFs rebuilt; 151 tests green.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01BkRLcc18rwT2Lysu6PbG7v
2026-09-06 19:29:09 +01:00
..
architectures docs: accessible figure legends (README.md) for all figures 2026-07-05 08:43:04 +01:00
bridge docs: accessible figure legends (README.md) for all figures 2026-07-05 08:43:04 +01:00
collapse docs: accessible figure legends (README.md) for all figures 2026-07-05 08:43:04 +01:00
E1 docs: accessible figure legends (README.md) for all figures 2026-07-05 08:43:04 +01:00
E2 docs: accessible figure legends (README.md) for all figures 2026-07-05 08:43:04 +01:00
E3 docs: accessible figure legends (README.md) for all figures 2026-07-05 08:43:04 +01:00
E4 docs: accessible figure legends (README.md) for all figures 2026-07-05 08:43:04 +01:00
E5 docs: accessible figure legends (README.md) for all figures 2026-07-05 08:43:04 +01:00
E6 docs: accessible figure legends (README.md) for all figures 2026-07-05 08:43:04 +01:00
E7 society: multi-locus recombination frame — the vertical claim (E7/E8) 2026-07-05 10:51:41 +01:00
E8 society: multi-locus recombination frame — the vertical claim (E7/E8) 2026-07-05 10:51:41 +01:00
E9 society: make the sexual-transmission model rigorous (E9 epistasis, E10 directed sex) 2026-07-05 11:13:37 +01:00
E10 society: make the sexual-transmission model rigorous (E9 epistasis, E10 directed sex) 2026-07-05 11:13:37 +01:00
E11 society: the dynamic Lamarckian society — the vertical claim (E11 / C3) 2026-07-05 12:34:01 +01:00
E12 E12: model speciation — the merge-compatibility limit of the sexual society 2026-07-08 22:40:02 +01:00
E12_nk E12: model speciation — the merge-compatibility limit of the sexual society 2026-07-08 22:40:02 +01:00
E14 E14: mating systems — monogamy vs promiscuity (mate-pool breadth) 2026-07-09 12:38:50 +01:00
grounding docs: accessible figure legends (README.md) for all figures 2026-07-05 08:43:04 +01:00
kernel_sharpen knowledge: learning kernel — model the estimator bias, not just sampling 2026-07-05 10:23:33 +01:00
kernel_smooth knowledge: learning kernel — model the estimator bias, not just sampling 2026-07-05 10:23:33 +01:00
llm_directed llm_directed: directed sex (breed offspring + select on verifier) — E10 in real weights 2026-07-05 18:35:04 +01:00
llm_directed_hard_hpc hard benchmark: the 7B "fusion wins / no headroom" results were saturation artefacts 2026-07-05 19:13:26 +01:00
llm_directed_hard_seeds Phase 3: LLM-tier speciation + multi-seed firm-up of the recombination claims 2026-09-06 15:39:15 +01:00
llm_directed_hpc llm_directed: directed sex (breed offspring + select on verifier) — E10 in real weights 2026-07-05 18:35:04 +01:00
llm_epistasis second review round: tempered claims, robust statistics, corrected technical statements 2026-09-06 17:55:46 +01:00
llm_epistasis_compat epistasis_predicts: functional conflict, not weight geometry, predicts merge failure pre-merge 2026-09-06 17:19:46 +01:00
llm_merge llm_merge_hpc: the 7B firm-up makes the Fisher-Muller sign decisive 2026-07-05 17:32:51 +01:00
llm_merge_hpc llm_merge_hpc: the 7B firm-up makes the Fisher-Muller sign decisive 2026-07-05 17:32:51 +01:00
llm_merge_seeds second review round: tempered claims, robust statistics, corrected technical statements 2026-09-06 17:55:46 +01:00
llm_moe llm_directed: directed sex (breed offspring + select on verifier) — E10 in real weights 2026-07-05 18:35:04 +01:00
llm_moe_hard_hpc hard benchmark: the 7B "fusion wins / no headroom" results were saturation artefacts 2026-07-05 19:13:26 +01:00
llm_moe_hard_seeds second review round: tempered claims, robust statistics, corrected technical statements 2026-09-06 17:55:46 +01:00
llm_moe_hpc llm_moe: the union operator (route/max-merge) vs fusion — and the regime flips at scale 2026-07-05 17:53:47 +01:00
llm_speciation second review round: tempered claims, robust statistics, corrected technical statements 2026-09-06 17:55:46 +01:00
llm_speciation_add Phase 3: LLM-tier speciation + multi-seed firm-up of the recombination claims 2026-09-06 15:39:15 +01:00
mnist_collapse neural: real-MNIST external-validity tier (collapse + grounding) 2026-07-05 09:19:36 +01:00
recombination docs: accessible figure legends (README.md) for all figures 2026-07-05 08:43:04 +01:00
speciation_real third review round: mathematical corrections + operator separation + headline calibration 2026-09-06 19:29:09 +01:00
speciation_real_cliff E13b/c: harden real-weight speciation — full symmetry group + emergent-divergence null 2026-09-06 12:35:14 +01:00
speciation_real_emergent E13b/c: harden real-weight speciation — full symmetry group + emergent-divergence null 2026-09-06 12:35:14 +01:00