MachineSex/tests
Giorgio Gilestro 48181a1c84 society: make the sexual-transmission model rigorous (E9 epistasis, E10 directed sex)
Deepen the sexual-reproduction frame before entering the full society, on
the two facets GG chose: landscape robustness and directed recombination.
Adds a Kauffman NK landscape (genotype.nk_fitness, tunable ruggedness),
finite n-parent crossover (genotype.crossover, per-gap recombination rate),
and hill-climb (parents = local optima = trained models).

E9 (recomb_landscape) -- the "why sex?" test: E8's dramatic super-parent
result used an ADDITIVE landscape. On rugged/epistatic landscapes, blindly
recombining local optima causes OUTBREEDING DEPRESSION -- offspring fall
below the parents, worse with both ruggedness and recombination rate (K=8,
free recomb: ~ -0.23), and the optimal recombination rate shrinks as
ruggedness grows. Design rule: merge freely when skills are complementary/
additive; sparingly (and with selection) when entangled.

E10 (directed_sex) -- directed sex beats biological sex: biology is stuck
with 2 random-mating parents and no offspring preview; an AI can choose
complementary mates, evaluate many recombinant offspring, keep the fittest,
and use unbounded parents (iterated recombine-then-select). Random
("biological") sex craters with ruggedness (0.66->0.51); directed sex
tracks/exceeds the best parent at every ruggedness -- converting the
outbreeding-depression catastrophe into a win. No biological analog.

Complete sexual-transmission picture: dramatic super-parent offspring when
skills are complementary (E8); outbreeding-depression risk when entangled
(E9); directed sex resolves the risk (E10). configs/layer1/{E9,E10}.yaml,
figures/plot_{E9,E10}.py, READMEs, +5 tests (117 green).

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
2026-07-05 11:13:37 +01:00
..
test_analysis.py Layer 1 complete: E3-E6 + E2 analysis add-ons 2026-07-04 18:54:42 +02:00
test_correctness.py Layer 1 core: Wright-Fisher knowledge-transmission model with E1-E2 2026-07-04 18:10:18 +02:00
test_genotype.py society: make the sexual-transmission model rigorous (E9 epistasis, E10 directed sex) 2026-07-05 11:13:37 +01:00
test_kernel.py knowledge: learning kernel — model the estimator bias, not just sampling 2026-07-05 10:23:33 +01:00
test_mnist.py neural: real-MNIST external-validity tier (collapse + grounding) 2026-07-05 09:19:36 +01:00
test_neural_correctness.py neural: grounding refinement + all five Layer-1.5 figures 2026-07-05 08:14:19 +01:00
test_neural_torch.py recombination: reproduce the E4 "merge, don't average" finding in real weights 2026-07-04 21:49:44 +01:00
test_neural_validation.py Layer 1.5: architecture-general neural existence proof 2026-07-04 21:02:49 +01:00
test_scientific_validation.py Layer 1 core: Wright-Fisher knowledge-transmission model with E1-E2 2026-07-04 18:10:18 +02:00