Code and data associated with "The evolution of sex for artificial intelligence - A population-genetic framework for multigenerational model populations". Gilestro, 2026
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Giorgio Gilestro 01d87e504f E13: real-weight model speciation — the Git Re-Basin residual confirms E12
The real-weight image of E12, and the answer to the mode-connectivity reviewer.
Small no-BN MLPs on MNIST, forked from a shared base and trained independently,
are weight-averaged; we measure the linear-mode-connectivity barrier before and
after in-house deterministic Git Re-Basin permutation alignment (neural/rebasin.py,
scipy linear_sum_assignment), decomposing it into removable (coordinate artefact)
and residual (reproductive isolation). kind: speciation_real.

Result (3 reps):
- shared (same task, shared fork): no barrier — trivially mergeable.
- independent (same task, different init): naive 0.056, alignment removes 98%
  (residual 0.001) — the incompatibility is a coordinate artefact.
- conflict (conflicting label maps): naive 0.496, alignment removes 0% (residual
  0.496) — genuine reproductive isolation. Because alignment demonstrably works on
  the independent case, the conflict residual is real, not a failure to align.
- Isolation cliff (speciation_real_cliff): residual rises 0.00->0.13->0.19->0.28->
  0.40->0.49 with the fraction of conflicting classes — the real-weight mirror of
  E12's cliff; residual==naive throughout (functional, not coordinate).

rebasin.py sanity-gated (recovers a known permutation exactly). plot_speciation_real.py
(2-panel), +4 pure-NumPy tests (142 green), README with honest positioning vs
Git Re-Basin / Entezari / Frankle / Pari 2024 / Zhou 2026. Wired into make mnist
(needs torchvision).

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
2026-07-09 00:19:04 +01:00
configs E13: real-weight model speciation — the Git Re-Basin residual confirms E12 2026-07-09 00:19:04 +01:00
figures E13: real-weight model speciation — the Git Re-Basin residual confirms E12 2026-07-09 00:19:04 +01:00
hpc hard benchmark: the 7B "fusion wins / no headroom" results were saturation artefacts 2026-07-05 19:13:26 +01:00
paper paper: v6 'The Evolution of Sex for AI' + fold in E12 model speciation as headline 2026-07-08 22:41:53 +01:00
results E13: real-weight model speciation — the Git Re-Basin residual confirms E12 2026-07-09 00:19:04 +01:00
src E13: real-weight model speciation — the Git Re-Basin residual confirms E12 2026-07-09 00:19:04 +01:00
tasks hard benchmark: the 7B "fusion wins / no headroom" results were saturation artefacts 2026-07-05 19:13:26 +01:00
tests E13: real-weight model speciation — the Git Re-Basin residual confirms E12 2026-07-09 00:19:04 +01:00
.gitignore neural: real-MNIST external-validity tier (collapse + grounding) 2026-07-05 09:19:36 +01:00
CLAUDE.md hard benchmark: the 7B "fusion wins / no headroom" results were saturation artefacts 2026-07-05 19:13:26 +01:00
Makefile E13: real-weight model speciation — the Git Re-Basin residual confirms E12 2026-07-09 00:19:04 +01:00
pyproject.toml llm: first real-LLM prototype — recombining specialist LLMs (C2/C4) 2026-07-05 15:48:02 +01:00
README.md paper: reframe the perspective paper around sexual reproduction (v4 -> v5) 2026-07-05 13:53:10 +01:00
uv.lock Layer 1.5: architecture-general neural existence proof 2026-07-04 21:02:49 +01:00

The Lamarckian Society — Layer 1 (analytical core)

A parametric population-genetics model of knowledge transmission across generations of learning agents. Knowledge transmission is modelled literally as a WrightFisher process (not by analogy): a model's knowledge is a distribution p_t over K discrete items; a fixed true distribution p* has a rare tail; each generational step is "sample from the parent (drift) + mix in fresh real samples (grounding/immigration) + refit." Model collapse is the loss of rare alleles under drift.

See paper/blueprint.md (the normative build spec), paper/the-lamarckian-society-v5.md (the perspective paper), and paper/results-summary.md (a summary of all results).

Reproduce

Environment is a uv venv built from the committed, hash-pinned uv.lock — that lockfile is the single source of truth for "it runs" (Layer 1 is pure NumPy/SciPy and bitwise-reproducible from a seed; no container needed).

# one-time: install uv (https://astral.sh/uv)
curl -LsSf https://astral.sh/uv/install.sh | sh

uv sync                 # build .venv from uv.lock
make test               # correctness + scientific-validation tests (the spine of trust)
make layer1             # run experiments E1E6
make figures            # regenerate figures from committed results

Layout

src/knowledge/   Layer 1 package (imported as `knowledge`)
configs/layer1/  one YAML per experiment (E1..E6)
figures/         plot_EX.py — read results.parquet only
tests/           test_correctness.py + test_scientific_validation.py (analytic checks)
paper/           blueprint.md, perspective paper, figure_manifest.md
results/         written artifacts (gitignored; hashes tracked in manifest.json)