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Giorgio Gilestro 6f8cef1ac5 main: keep only what reproduces the manuscript; everything else lives on dev 
Removed from main (all preserved on the dev branch): the arXiv build and
its sources, design documents (blueprint, results summary, review responses,
essay drafts), tasks/ and CLAUDE.md, the cover letter and reference tooling,
two unused manuscript figures, and every experiment that feeds no figure or
number in the paper: the collapse null, the sexual-vs-asexual lineage, the
NK speciation variant, the 0.5B single-seed LLM prototypes, the compose and
society experiments with their calibration and pilot runs, and their
configs, runners, tests, figure scripts and PBS jobs. Their result bundles
are moved to results/_archive/ (ignored) so the parquets stay on disk.

Also: plot_llm_speciation reads the s{seed}/ layout; the mating-breadth
plot writes under its bundle name; Makefile targets reduced to the kept
experiments; REPRODUCING.md and README point to dev for the rest.

Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01Y64o8FKP7rCuXzC48pxpMm
2026-09-13 17:07:23 +01:00
..
bridge main: keep only what reproduces the manuscript; everything else lives on dev 2026-09-13 17:07:23 +01:00
collapse main: keep only what reproduces the manuscript; everything else lives on dev 2026-09-13 17:07:23 +01:00
fig2_grounding_sweep main: keep only what reproduces the manuscript; everything else lives on dev 2026-09-13 17:07:23 +01:00
fig2_mnist_collapse main: keep only what reproduces the manuscript; everything else lives on dev 2026-09-13 17:07:23 +01:00
fig4_society_ablation main: keep only what reproduces the manuscript; everything else lives on dev 2026-09-13 17:07:23 +01:00
fig5_speciation_bdm main: keep only what reproduces the manuscript; everything else lives on dev 2026-09-13 17:07:23 +01:00
figS1_architectures main: keep only what reproduces the manuscript; everything else lives on dev 2026-09-13 17:07:23 +01:00
figS2_kernel_sharpen main: keep only what reproduces the manuscript; everything else lives on dev 2026-09-13 17:07:23 +01:00
figS2_kernel_smooth main: keep only what reproduces the manuscript; everything else lives on dev 2026-09-13 17:07:23 +01:00
figS3_rebaselining main: keep only what reproduces the manuscript; everything else lives on dev 2026-09-13 17:07:23 +01:00
figS5_aimed_grounding main: keep only what reproduces the manuscript; everything else lives on dev 2026-09-13 17:07:23 +01:00
figS6_grounding_rnn main: keep only what reproduces the manuscript; everything else lives on dev 2026-09-13 17:07:23 +01:00
figS8_multiparent_union main: keep only what reproduces the manuscript; everything else lives on dev 2026-09-13 17:07:23 +01:00
figS9_specialist_superparent main: keep only what reproduces the manuscript; everything else lives on dev 2026-09-13 17:07:23 +01:00
figS10_rugged_landscapes main: keep only what reproduces the manuscript; everything else lives on dev 2026-09-13 17:07:23 +01:00
figS11_directed_recombination main: keep only what reproduces the manuscript; everything else lives on dev 2026-09-13 17:07:23 +01:00
figS12_quality_diversity main: keep only what reproduces the manuscript; everything else lives on dev 2026-09-13 17:07:23 +01:00
figS13_mating_breadth main: keep only what reproduces the manuscript; everything else lives on dev 2026-09-13 17:07:23 +01:00
llm_curriculum_v5 Manuscript revision and pending experiment work, snapshot before restructuring 2026-09-13 16:54:09 +01:00
llm_curriculum_v5_cull main: keep only what reproduces the manuscript; everything else lives on dev 2026-09-13 17:07:23 +01:00
llm_curriculum_v5_decor main: keep only what reproduces the manuscript; everything else lives on dev 2026-09-13 17:07:23 +01:00
llm_curriculum_v5_early main: keep only what reproduces the manuscript; everything else lives on dev 2026-09-13 17:07:23 +01:00
llm_curriculum_v5_early_obl Manuscript revision and pending experiment work, snapshot before restructuring 2026-09-13 16:54:09 +01:00
llm_curriculum_v5_late Manuscript revision and pending experiment work, snapshot before restructuring 2026-09-13 16:54:09 +01:00
llm_curriculum_v5_late_obl Manuscript revision and pending experiment work, snapshot before restructuring 2026-09-13 16:54:09 +01:00
llm_curriculum_v5_stop3 main: keep only what reproduces the manuscript; everything else lives on dev 2026-09-13 17:07:23 +01:00
llm_curriculum_v5_veto Manuscript revision and pending experiment work, snapshot before restructuring 2026-09-13 16:54:09 +01:00
llm_directed_hard_hpc Manuscript revision and pending experiment work, snapshot before restructuring 2026-09-13 16:54:09 +01:00
llm_directed_hard_seeds Phase 3: LLM-tier speciation + multi-seed firm-up of the recombination claims 2026-09-06 15:39:15 +01:00
llm_directed_hpc llm_directed: directed sex (breed offspring + select on verifier) — E10 in real weights 2026-07-05 18:35:04 +01:00
llm_epistasis main: keep only what reproduces the manuscript; everything else lives on dev 2026-09-13 17:07:23 +01:00
llm_epistasis_compat epistasis_predicts: functional conflict, not weight geometry, predicts merge failure pre-merge 2026-09-06 17:19:46 +01:00
llm_merge_hpc Manuscript revision and pending experiment work, snapshot before restructuring 2026-09-13 16:54:09 +01:00
llm_merge_seeds main: keep only what reproduces the manuscript; everything else lives on dev 2026-09-13 17:07:23 +01:00
llm_merge_seeds_smol main: keep only what reproduces the manuscript; everything else lives on dev 2026-09-13 17:07:23 +01:00
llm_moe_hard_hpc Manuscript revision and pending experiment work, snapshot before restructuring 2026-09-13 16:54:09 +01:00
llm_moe_hard_seeds second review round: tempered claims, robust statistics, corrected technical statements 2026-09-06 17:55:46 +01:00
llm_moe_hard_seeds_smol Manuscript revision and pending experiment work, snapshot before restructuring 2026-09-13 16:54:09 +01:00
llm_moe_hpc llm_moe: the union operator (route/max-merge) vs fusion — and the regime flips at scale 2026-07-05 17:53:47 +01:00
llm_speciation main: keep only what reproduces the manuscript; everything else lives on dev 2026-09-13 17:07:23 +01:00
llm_speciation_add Phase 3: LLM-tier speciation + multi-seed firm-up of the recombination claims 2026-09-06 15:39:15 +01:00
recombination main: keep only what reproduces the manuscript; everything else lives on dev 2026-09-13 17:07:23 +01:00
speciation_real main: keep only what reproduces the manuscript; everything else lives on dev 2026-09-13 17:07:23 +01:00
speciation_real_cliff E13b/c: harden real-weight speciation — full symmetry group + emergent-divergence null 2026-09-06 12:35:14 +01:00
speciation_real_emergent E13b/c: harden real-weight speciation — full symmetry group + emergent-divergence null 2026-09-06 12:35:14 +01:00