Rename neural experiments to descriptive paths (drop N* codes)
configs/neural/{N0,N1,N2,N5}.yaml -> {bridge,collapse,grounding,architectures}.yaml,
results dirs likewise. Updated experiment/output.dir fields, comments/docstrings, and
docs; regenerated the four result manifests (now carrying the real git commit). No
functional path resolution referenced the codes (the Makefile globs configs/neural/*.yaml
and tests use inline configs), so nothing breaks. 92 tests green.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
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CLAUDE.md
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CLAUDE.md
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@ -13,10 +13,12 @@ This file provides guidance to Claude Code (claude.ai/code) when working with co
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models* (histogram bridge + RNN + MLP; VAE implemented but not fidelity-passing) on a
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fully-synthetic sandbox with an exact oracle, plus real MNIST as a later secondary tier. See
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`tasks/todo.md` for status and `~/.claude/plans/we-are-going-to-cheerful-fog.md` for the plan.
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**Done:** scaffold, the histogram bridge gate (reproduces Layer 1 exactly), N0 (bridge, neural
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g*=0.047 ≈ Layer 1), N1 (collapse in RNN weights), N2 (neural phase boundary), N5
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(architecture-generality). **Remaining:** N4 (mean-vs-max-merge, load-bearing), N3, N6, figures,
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the MNIST tier. The LLM/LoRA rung and the C3 vertical claim are deferred.
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**Done:** scaffold, the histogram bridge gate (reproduces Layer 1 exactly), `bridge` (neural
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g*=0.047 ≈ Layer 1), `collapse` (in RNN weights), `grounding` (neural phase boundary),
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`architectures` (architecture-generality). **Remaining:** `recombination` (mean-vs-max-merge,
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load-bearing), `region_matched`, `remint`, figures, the MNIST tier. The LLM/LoRA rung and the C3
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vertical claim are deferred. Experiments are named descriptively (`configs/neural/<name>.yaml`),
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not by code.
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The two design documents are the source of truth for intent:
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