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figures: publication-ready — unified, lettered, codename-free

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paper/pnas/make_figs.py re-plots every panel directly from the committed
results artifacts into six single-file figures (figs/fig1..fig6.pdf):
no experiment codenames or suptitles (interpretation moved to captions),
bold panel letters, plain-language axis labels and legend entries, one
consistent style (8pt, no top/right spines). Panels: fig1 A-B (grounding
equilibrium + MNIST montage with its baked-in title cropped), fig2 A-B
(blending cancellation + Fisher-Muller), fig3 A-D (outbreeding, directed
recombination, mating breadth champion + diversity), fig4 A-C (society
ablation trajectories), fig5 A-F (speciation: analytic curve + cliff,
MLP decomposition + conflict sweep, LLM coherence + duration null),
fig6 A-D (seed-replicated merging, 7B-hard routing vs averaging,
predictive-test scatter, predictor comparison). build.py now places the
single PDFs; captions rewritten per lettered panel; in-text panel refs
updated (5B->5C-D, 5C->5E-F); stale stacked copies removed. Document
20pp -> 18pp.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01BkRLcc18rwT2Lysu6PbG7v
This commit is contained in:
Giorgio Gilestro 2026-09-07 09:09:46 +01:00
parent 6f1f8bf172
commit 96902e87f0
26 changed files with 469 additions and 96 deletions
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tasks/workorder-pnas-submission.md
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@ -177,9 +177,11 @@ re-run md2tex + tectonic at that point)
- [ ] **Dual-audience devices**: Table 1 = the population-genetics ↔ machine-learning dictionary;
every term defined in one clause at first use; keep "the ML statement / the genetics statement"
paired-paragraph device, compressed.
- [x] **Figures: 6 composed figures** (LaTeX-level stacking of committed vector PDFs via build.py:
collapse+grounding / recombination core / rugged landscapes / society / speciation x3 tiers / LLM
tier). *(Bespoke unified re-plots = submission polish.)* Original plan:
- [x] **Figures: publication-ready** (paper/pnas/make_figs.py re-plots all 6 figures from committed
artifacts as unified, lettered, codename-free panels — no suptitles, plain-language labels;
fig1 A-B grounding+MNIST montage (title band cropped), fig2 A-B blending/Fisher-Muller,
fig3 A-D rugged+mating, fig4 A-C society, fig5 A-F speciation x3 tiers, fig6 A-D LLM tier;
captions rewritten per panel; in-text refs updated; doc 20pp -> 18pp). Original plan:
(1 concept/dictionary+operator schematic; 2 collapse&grounding incl. the MNIST digit-decay
montage — the one image both audiences get instantly; 3 sex: Fisher–Muller/outbreeding/directed +
merge-don't-average; 4 speciation across three tiers; 5 society ablation + headroom law).