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references: citation-order renumbering, PNAS style, full verification

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All 66 references renumbered to first-appearance order (programmatically
verified: in-text sequence = 1..66 = list order; ranges expanded,
remapped, recompressed) and rewritten in PNAS style (initials-first
authors with the >5 -> et-al rule, sentence-case titles, abbreviated
italic venues, bold volumes, year-at-end, arXiv [Preprint] + 10.48550
DOIs). Correctness: 47 arXiv ids batch-verified against the arXiv API
(title/first-author/year); caught and fixed an authorless GENOME entry
(Y. Zhang et al.), "Sakana AI" -> J. Abrantes et al., a wrong Kotha id
(2310.05719, a different paper -> 2309.10105), Nemotron's corporate
author, and Liang's truncated title. Also: six load-bearing refs that
lost their in-text anchors during the restructure re-anchored (NK, QD,
Pari, LoRA, Sharma, Kozodoi), one real mis-citation fixed
(Self-Instruct credited to Multiagent-Finetuning; new ref added), and
four figure captions in build.py brought up to third-review calibration
(operational grounding threshold; first-order conservation;
complementary-contributions society; permutation-and-rescaling
alignment). 20-pp rebuild clean.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01BkRLcc18rwT2Lysu6PbG7v
This commit is contained in:
Giorgio Gilestro 2026-09-07 09:00:56 +01:00
parent 543cbe3e45
commit 6f1f8bf172
5 changed files with 218 additions and 205 deletions
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14
tasks/workorder-pnas-submission.md
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@ -204,9 +204,17 @@ re-run md2tex + tectonic at that point)
- [x] Downplaying removed: convergence framing (diagnosis reached independently; Riis/Benati/Yoon +
Crutchfield&Whalen 2012 cited for priority of publication; convergence = corroboration; the full
arc owned). Applied to PNAS draft + v6 abstract.
- [x] References 30 → 65 (all verified by the lit agents; append-only numbering — citation-order
renumbering is a submission-time mechanical fix, with refs 31–65 to be reordered by first
appearance when reflowing to pnas.cls).
- [x] References: DONE fully (2026-08-11) — 66 entries renumbered to first-appearance order
(verified programmatically: in-text order = 1..66 = list order), reformatted to PNAS style
(initials-first, sentence case, abbreviated italic journals, bold volumes, year-at-end,
arXiv [Preprint] + DOI), and verified: all 47 arXiv ids batch-checked against the API
(caught + fixed: authorless GENOME -> Y. Zhang et al.; "Sakana AI" -> J. Abrantes et al.;
wrong Kotha id 2310.05719 -> 2309.10105; Nemotron corporate author; Liang full title;
>5-author entries to et-al form). Six orphaned refs re-anchored in text (NK, QD, Pari, LoRA,
Sharma, Kozodoi) and one mis-citation fixed (Self-Instruct, new ref, was credited to
Multiagent-Finetuning). Figure captions in build.py brought to third-review calibration
(operational threshold; first-order conservation; complementary-contributions society;
permutation-and-rescaling alignment).
- [ ] v6 long-form: sync the premise/CL sections if GG wants the long document to match (currently
only the convergence fix is propagated).