giorgio/MachineSex
1
0
Fork 0
Code Issues Pull requests Projects Releases Packages Wiki Activity Actions

Fig. 1B polish: larger text, no overlaps, speech bubble says hi

Browse source 
Per GG: the "a society in time" label no longer collides with the gen-2
agent's capability dots (taller canvas, pedigree spread), the "inherit" label
clears the timeline (shortened; the caption carries "training on output"),
the cryptic "..." bubble now reads "hi!", and every text element is one to
two points larger.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01BkRLcc18rwT2Lysu6PbG7v
This commit is contained in:
Giorgio Gilestro 2026-09-07 12:59:59 +01:00
parent b417a66c23
commit 3a41ee0c2e
3 changed files with 41 additions and 41 deletions
Download patch file Download diff file Expand all files Collapse all files

BIN
paper/pnas/figs/fig1b.pdf
View file

Binary file not shown.

BIN
paper/pnas/main.pdf
View file

Binary file not shown.

80
paper/pnas/make_figs.py
View file

@ -179,7 +179,7 @@ def _robot(ax, x, y, fc="#e8eef5", dots=(), lost=(), w=0.52, h=0.52):
def fig1b():
from matplotlib.patches import Circle, FancyArrowPatch
W, H = 11.4, 4.1
W, H = 11.4, 4.5
fig, ax = plt.subplots(figsize=(W, H))
ax.set_xlim(0, W)
ax.set_ylim(0, H)
@ -188,11 +188,11 @@ def fig1b():
ax.text(0.05, H - 0.05, "B", fontsize=13, fontweight="bold", va="top")
def arrow(p, q, color="#666", lw=1.2, style="-|>", shrink=2.0, ls="-"):
ax.add_patch(FancyArrowPatch(p, q, arrowstyle=style, mutation_scale=9, color=color,
ax.add_patch(FancyArrowPatch(p, q, arrowstyle=style, mutation_scale=10, color=color,
lw=lw, linestyle=ls, shrinkA=shrink, shrinkB=shrink))
# ---------------- left: a society in space (contemporaries exchanging messages)
cx, cy, r = 2.45, 2.45, 0.95
cx, cy, r = 2.45, 2.70, 0.95
dotsets = [(BLUE, GOLD), (GREEN,), (BLUE, GREEN), (GOLD, GREEN), (BLUE,)]
pos = []
for i, ds in enumerate(dotsets):
@ -202,61 +202,61 @@ def fig1b():
_robot(ax, x, y, dots=ds)
for i, j2 in [(0, 2), (1, 3), (2, 4), (0, 3), (1, 4)]:
arrow(pos[i], pos[j2], color="#99a", lw=0.9, style="<|-|>", shrink=26, ls=(0, (4, 2)))
ax.text(pos[0][0] + 0.60, pos[0][1] + 0.30, "\u2026", fontsize=9, ha="center",
bbox=dict(boxstyle="round,pad=0.22", fc="white", ec="#99a", lw=0.8))
clk = (0.55, 3.72)
ax.text(pos[0][0] + 0.72, pos[0][1] + 0.38, "hi!", fontsize=8, ha="center",
bbox=dict(boxstyle="round,pad=0.25", fc="white", ec="#99a", lw=0.8))
clk = (0.55, 4.08)
ax.add_patch(Circle(clk, 0.21, fc="white", ec="#445", lw=1.1))
ax.plot([clk[0], clk[0]], [clk[1], clk[1] + 0.13], color="#445", lw=1.0)
ax.plot([clk[0], clk[0] + 0.10], [clk[1], clk[1]], color="#445", lw=1.0)
ax.text(clk[0], clk[1] - 0.34, "one moment", ha="center", fontsize=6, style="italic",
ax.text(clk[0], clk[1] - 0.34, "one moment", ha="center", fontsize=7, style="italic",
color="#555")
ax.text(2.45, 0.48, "a society in space", ha="center", fontsize=9.5, fontweight="bold")
ax.text(2.45, 0.22, "contemporaries exchanging messages \u2014 multi-agent systems, agent economies",
ha="center", fontsize=6.6, style="italic", color="#555")
ax.text(2.45, 0.55, "a society in space", ha="center", fontsize=11, fontweight="bold")
ax.text(2.45, 0.24, "contemporaries exchanging messages \u2014 multi-agent systems, agent economies",
ha="center", fontsize=7.5, style="italic", color="#555")
# ---------------- middle: the shift of perspective
arrow((4.62, 2.30), (5.90, 2.30), color="#445", lw=2.0, style="-|>")
ax.text(5.26, 2.44, "the same ecosystem,\nseen along its time axis", ha="center",
va="bottom", fontsize=7, style="italic", color="#334", linespacing=1.3)
arrow((4.60, 2.50), (5.95, 2.50), color="#445", lw=2.0, style="-|>")
ax.text(5.27, 2.66, "the same ecosystem,\nseen along its time axis", ha="center",
va="bottom", fontsize=8, style="italic", color="#334", linespacing=1.3)
# ---------------- right: a society in time (a pedigree)
axx = 6.55
arrow((axx, 3.90), (axx, 0.90), color="#445", lw=1.3)
for gy, lab in [(3.45, "gen 0"), (2.20, "gen 1"), (1.05, "gen 2")]:
ax.text(axx - 0.12, gy, lab, ha="right", va="center", fontsize=6.5, color="#445")
axx = 6.8
arrow((axx, 4.30), (axx, 1.00), color="#445", lw=1.3)
for gy, lab in [(3.80, "gen 0"), (2.55, "gen 1"), (1.35, "gen 2")]:
ax.text(axx - 0.12, gy, lab, ha="right", va="center", fontsize=7.5, color="#445")
p1, p2 = (7.55, 3.45), (9.25, 3.45)
c1, c2 = (7.15, 2.20), (8.65, 2.20)
g2 = (8.65, 1.05)
p1, p2 = (8.0, 3.80), (9.5, 3.80)
c1, c2 = (7.5, 2.55), (9.0, 2.55)
g2 = (9.0, 1.35)
_robot(ax, *p1, dots=(BLUE, GOLD))
_robot(ax, *p2, dots=(GREEN, BLUE))
_robot(ax, *c1, dots=(BLUE,), lost=(GOLD,))
_robot(ax, *c2, dots=(BLUE, GREEN, GOLD))
_robot(ax, *g2, dots=(BLUE, GREEN, GOLD))
arrow((7.42, 2.94), (7.20, 2.66), color="#666")
ax.text(7.02, 2.86, "inherit\n(train on output)", ha="right", fontsize=6, style="italic",
color="#555", linespacing=1.2)
arrow((7.72, 2.94), (8.48, 2.66), color="#666")
arrow((9.15, 2.94), (8.84, 2.66), color="#666")
ax.text(8.68, 2.92, "merge (sex)", ha="center", fontsize=6, style="italic", color="#555")
ax.text(7.15, 1.50, "rare skill lost", ha="center", fontsize=5.8, style="italic",
arrow((7.87, 3.26), (7.56, 3.04), color="#666")
ax.text(7.42, 3.16, "inherit", ha="right", fontsize=7, style="italic", color="#555")
arrow((8.15, 3.24), (8.85, 3.04), color="#666")
arrow((9.40, 3.24), (9.13, 3.04), color="#666")
ax.text(9.0, 3.14, "merge (sex)", ha="center", fontsize=7, style="italic", color="#555",
bbox=dict(boxstyle="round,pad=0.12", fc="white", ec="none"))
ax.text(7.5, 1.83, "rare skill lost", ha="center", fontsize=6.8, style="italic",
color="#a33")
arrow((8.65, 1.64), (8.65, 1.46), color="#666")
globe = (10.55, 1.60)
ax.add_patch(Circle(globe, 0.30, fc="#eaf4fb", ec="#2c7fb8", lw=1.2))
arrow((9.0, 1.99), (9.0, 1.81), color="#666")
globe = (10.55, 1.85)
ax.add_patch(Circle(globe, 0.32, fc="#eaf4fb", ec="#2c7fb8", lw=1.2))
from matplotlib.patches import Arc as _Arc
ax.add_patch(_Arc(globe, 0.30, 0.60, theta1=90, theta2=270, ec="#2c7fb8", lw=0.8))
ax.add_patch(_Arc(globe, 0.30, 0.60, theta1=270, theta2=90, ec="#2c7fb8", lw=0.8))
ax.plot([globe[0] - 0.30, globe[0] + 0.30], [globe[1], globe[1]], color="#2c7fb8", lw=0.8)
ax.text(globe[0], globe[1] - 0.42, "reality\n(verifier)", ha="center", va="top", fontsize=6,
ax.add_patch(_Arc(globe, 0.32, 0.64, theta1=90, theta2=270, ec="#2c7fb8", lw=0.8))
ax.add_patch(_Arc(globe, 0.32, 0.64, theta1=270, theta2=90, ec="#2c7fb8", lw=0.8))
ax.plot([globe[0] - 0.32, globe[0] + 0.32], [globe[1], globe[1]], color="#2c7fb8", lw=0.8)
ax.text(globe[0], globe[1] - 0.44, "reality\n(verifier)", ha="center", va="top", fontsize=7,
color="#2c7fb8", linespacing=1.2)
arrow((10.26, 1.45), (9.02, 1.15), color="#2c7fb8", lw=1.2)
ax.text(9.72, 1.52, "ground\n(immigrate)", ha="center", fontsize=6, style="italic",
color="#2c7fb8", linespacing=1.2)
ax.text(8.55, 0.48, "a society in time", ha="center", fontsize=9.5, fontweight="bold")
ax.text(8.55, 0.22, "generations coupled by inheritance, recombination, and grounding \u2014 "
arrow((10.22, 1.70), (9.38, 1.45), color="#2c7fb8", lw=1.2)
ax.text(9.82, 1.78, "ground\n(immigrate)", ha="center", va="bottom", fontsize=7,
style="italic", color="#2c7fb8", linespacing=1.2)
ax.text(8.9, 0.55, "a society in time", ha="center", fontsize=11, fontweight="bold")
ax.text(8.9, 0.24, "generations coupled by inheritance, recombination, grounding \u2014 "
"where population genetics applies",
ha="center", fontsize=6.6, style="italic", color="#555")
ha="center", fontsize=7.2, style="italic", color="#555")
save(fig, "fig1b")
# ---------------------------------------------------------------- fig 2: grounding + MNIST