giorgio/MachineSex
1
0
Fork 0
Code Issues Pull requests Projects Releases Packages Wiki Activity Actions

Paper-wide rename: the pop-gen construct is "the biological model"; "(exact)" dropped

Browse source 
"Model" now means an AI model everywhere; the Wright-Fisher construct is "the
biological model" throughout (19 occurrences): tier header, section title (now
"The biological model, and where trained learners depart from it"), Table 1
support column ("Exact" -> "Closed form"; "Analytic model" -> "Biological
model"), Results, Discussion, Methods ("Biological-model tier"), and all
figure captions. "Exact" survives only in technical noun phrases (exact-match
verifier, exact oracle, exact equilibrium, exact recovery); the abstract's
"exactly Wright-Fisher" is now "literally Wright-Fisher".

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01BkRLcc18rwT2Lysu6PbG7v
This commit is contained in:
Giorgio Gilestro 2026-09-07 13:08:58 +01:00
parent f1970728cf
commit 2d8f661924
7 changed files with 67 additions and 63 deletions
Download patch file Download diff file Expand all files Collapse all files

12
tasks/lessons.md
View file

@ -32,8 +32,10 @@ statement about the literature or the result. Confident papers situate; they do
reader-facing prose in every project.)
## Terminology: "model" is overloaded in this project (2026-09-07)
In the PNAS manuscript and figures, "model" must mean an AI model. The theory tier is
"population genetics" / "the Wright–Fisher simulator" / "the minimal inheritance model"
(with the disambiguating adjective), never a bare "model" label — GG flagged Fig. 1's
"Exact model" header as confusing for exactly this reason. When naming tiers, panels, or
headers, reserve the bare word for trained AI systems.
In the PNAS manuscript and figures, "model" must mean an AI model. The settled term for the
pop-gen construct is **"the biological model"** (GG decision, 2026-09-07) — used everywhere
("the multi-locus biological model", "Biological-model tier"), never "minimal model",
"analytic model", or "exact model"; GG also vetoed "(exact)" as a tier label (the guarantee
line "closed forms · bitwise-reproducible" carries that content). Support level formerly
"Exact" is now "Closed form". Keep "exact" only in technical noun phrases (exact-match
verifier, exact oracle, exact equilibrium, exact recovery).