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Paper-wide rename: the pop-gen construct is "the biological model"; "(exact)" dropped

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"Model" now means an AI model everywhere; the Wright-Fisher construct is "the
biological model" throughout (19 occurrences): tier header, section title (now
"The biological model, and where trained learners depart from it"), Table 1
support column ("Exact" -> "Closed form"; "Analytic model" -> "Biological
model"), Results, Discussion, Methods ("Biological-model tier"), and all
figure captions. "Exact" survives only in technical noun phrases (exact-match
verifier, exact oracle, exact equilibrium, exact recovery); the abstract's
"exactly Wright-Fisher" is now "literally Wright-Fisher".

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01BkRLcc18rwT2Lysu6PbG7v
This commit is contained in:
Giorgio Gilestro 2026-09-07 13:08:58 +01:00
parent f1970728cf
commit 2d8f661924
7 changed files with 67 additions and 63 deletions
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2
paper/pnas/make_figs.py
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@ -47,7 +47,7 @@ def fig1a():
from matplotlib.patches import FancyBboxPatch
TIERS = [
("Population genetics (exact)", "Wright\u2013Fisher simulator (NumPy)", "closed forms \u00b7 bitwise-reproducible",
("Biological model", "Wright\u2013Fisher simulator (NumPy)", "closed forms \u00b7 bitwise-reproducible",
"#3d7eb8", "#eaf2fa"),
("Trained networks", "RNN \u00b7 MLP \u00b7 VAE on a synthetic oracle;\nconvolutional VAE on MNIST",
"sign-level tests \u00b7 exact oracles", "#e97313", "#fdefe1"),