society: the dynamic Lamarckian society — the vertical claim (E11 / C3)
The culmination. A finite population of agents (genotypes, L loci) evolves
on a rugged NK landscape that IS reality (knowledge/dynamic_society.py),
composing the four operators the whole study built toward: grounding,
directed recombination (sex), quality-diversity selection, and mutation.
Grounding is made load-bearing via the consensus-conformity (self-
consumption) mechanism (GG decision): selection acts on
g*true_fitness + (1-g)*conformity, where conformity = agreement with the
population's own consensus, so at g=0 the society optimises fitting-the-
crowd rather than reality.
4-arm ablation (12 reps), each breaking distinctly, only the full society
climbing (global_opt ~ 0.79):
- full 0.78 climbs to the optimum, diversity maintained longest
- no_sex 0.77 can't recombine to escape local optima
- no_diversity 0.74 greedy: collapses diversity fastest, worse local optimum
- no_grounding 0.48 self-consumption collapse to an unfit consensus
(trains on the crowd -> confident-but-wrong mean;
conformity-true gap ~ 0.5)
This integrates E1-E6 + the learning kernel + E7-E10 into one system and
shows the Lamarckian society needs ALL of grounding + directed sex +
diversity: on a rugged landscape you need diversity to explore basins, sex
to recombine them, and grounding to select on reality -- remove any one and
you fail differently. Closes the C3 vertical claim analytically; the LLM
rung remains the eventual empirical instantiation.
New: knowledge/dynamic_society.py, configs/layer1/E11.yaml, figures/
plot_E11.py, README, tests/test_dynamic_society.py (+5). kind:
dynamic_society dispatch; make layer1 wired. 122 tests green.
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
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parent
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@ -84,6 +84,8 @@ E4's whole purpose is to isolate the effect of teacher **decorrelation ρ**, so
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**Finding (2026-07-05, E9/E10 — the sexual-transmission model made rigorous: when sex helps, and directed sex).** Deepening the sexual metaphor (GG excited; wanted it robust before the full society). Added a **Kauffman NK landscape** (`genotype.nk_fitness`, tunable ruggedness `K`), finite **crossover** (`genotype.crossover`, n-parent, per-gap recombination rate), and **hill-climb** (parents = local optima = "trained models"). **E9 (`kind: recomb_landscape`) — landscape robustness / "why sex?":** E8's dramatic transgression used an *additive* landscape; on rugged (epistatic) landscapes, blindly recombining local optima causes **outbreeding depression** — mean offspring fall *below* the parents, worse with ruggedness AND recombination rate (`K=8`, free recomb: ≈ −0.23), and the **optimal recombination rate shrinks as ruggedness grows**. Design rule: *merge freely when skills are complementary/additive; sparingly + with selection when entangled.* **E10 (`kind: directed_sex`) — directed sex beats biological sex (the AI superpower):** biology is stuck with 2 random-mating parents and no offspring preview; an AI can **choose complementary mates + evaluate many recombinant offspring + keep the fittest + use unbounded parents** (iterated recombine-then-select). Result: random ("biological") sex craters with ruggedness (0.66→0.51), while **directed sex tracks/exceeds the best parent at every ruggedness** — converting the outbreeding-depression catastrophe into a win. This is the practical, distinctly-AI payoff and has no biological analog. `configs/layer1/{E9,E10}.yaml`, `plot_{E9,E10}.py`, READMEs, +5 tests (117 green). Complete sexual-transmission picture: **dramatic super-parent offspring when skills are complementary (E8); outbreeding-depression risk when entangled (E9); directed sex resolves the risk (E10).**
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**Finding (2026-07-05, E9/E10 — the sexual-transmission model made rigorous: when sex helps, and directed sex).** Deepening the sexual metaphor (GG excited; wanted it robust before the full society). Added a **Kauffman NK landscape** (`genotype.nk_fitness`, tunable ruggedness `K`), finite **crossover** (`genotype.crossover`, n-parent, per-gap recombination rate), and **hill-climb** (parents = local optima = "trained models"). **E9 (`kind: recomb_landscape`) — landscape robustness / "why sex?":** E8's dramatic transgression used an *additive* landscape; on rugged (epistatic) landscapes, blindly recombining local optima causes **outbreeding depression** — mean offspring fall *below* the parents, worse with ruggedness AND recombination rate (`K=8`, free recomb: ≈ −0.23), and the **optimal recombination rate shrinks as ruggedness grows**. Design rule: *merge freely when skills are complementary/additive; sparingly + with selection when entangled.* **E10 (`kind: directed_sex`) — directed sex beats biological sex (the AI superpower):** biology is stuck with 2 random-mating parents and no offspring preview; an AI can **choose complementary mates + evaluate many recombinant offspring + keep the fittest + use unbounded parents** (iterated recombine-then-select). Result: random ("biological") sex craters with ruggedness (0.66→0.51), while **directed sex tracks/exceeds the best parent at every ruggedness** — converting the outbreeding-depression catastrophe into a win. This is the practical, distinctly-AI payoff and has no biological analog. `configs/layer1/{E9,E10}.yaml`, `plot_{E9,E10}.py`, READMEs, +5 tests (117 green). Complete sexual-transmission picture: **dramatic super-parent offspring when skills are complementary (E8); outbreeding-depression risk when entangled (E9); directed sex resolves the risk (E10).**
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**Finding (2026-07-05, E11 — the dynamic Lamarckian society: the vertical claim / C3, realized).** The culmination: a finite population of `N` agents (genotypes, `L` loci) evolves on a rugged NK landscape that *is* reality (`knowledge/dynamic_society.py`), composing the four operators the whole study built toward — grounding, directed recombination (sex), quality-diversity selection, mutation. Grounding is made load-bearing via the **consensus-conformity (self-consumption)** mechanism (GG decision): selection acts on `g·true_fitness + (1−g)·conformity` (conformity = agreement with the population's own consensus), so `g=0` optimises fitting-the-crowd rather than reality. **4-arm ablation (12 reps), each breaking distinctly, only the full society climbing (global_opt≈0.79):** `full` 0.78 (climbs to the optimum, diversity maintained longest) · `no_sex` 0.77 (can't recombine to escape local optima) · `no_diversity`/greedy 0.74 (collapses diversity fastest, stuck at a worse local optimum) · **`no_grounding` 0.48 (self-consumption collapse to an unfit consensus** — trains on the crowd, regresses to a confident-but-wrong mean; conformity−true gap ≈0.5). This integrates E1–E6 + the kernel + E7–E10 into one system and shows the society needs **all** of grounding + directed sex + diversity: on a rugged landscape you need diversity to explore basins, sex to recombine them, grounding to select on reality — remove any and you fail differently. `configs/layer1/E11.yaml`, `plot_E11.py`, README, +5 tests (122 green). **This closes the C3 vertical claim analytically** (the LLM rung remains the eventual empirical instantiation).
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## Build order (blueprint §7) — respect the gate
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## Build order (blueprint §7) — respect the gate
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1. Scaffold: repo layout (§5), container, pytest skeleton, config system, seeding utils. `make test` green.
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1. Scaffold: repo layout (§5), container, pytest skeleton, config system, seeding utils. `make test` green.
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2
Makefile
2
Makefile
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@ -16,7 +16,7 @@ test: ## correctness tests + scientific-validation tests (the spine
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uv run pytest
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uv run pytest
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layer1: ## run experiments E1-E6 + the learning-kernel bridge (analytic)
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layer1: ## run experiments E1-E6 + the learning-kernel bridge (analytic)
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for e in E1 E2 E3 E4 E5 E6 E7 E8 E9 E10 kernel_sharpen kernel_smooth; do uv run python -m knowledge.experiment configs/layer1/$$e.yaml; done
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for e in E1 E2 E3 E4 E5 E6 E7 E8 E9 E10 E11 kernel_sharpen kernel_smooth; do uv run python -m knowledge.experiment configs/layer1/$$e.yaml; done
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neural: ## run Layer 1.5 synthetic neural experiments (excludes the heavy MNIST tier)
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neural: ## run Layer 1.5 synthetic neural experiments (excludes the heavy MNIST tier)
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for c in configs/neural/*.yaml; do case "$$c" in *mnist*) ;; \
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for c in configs/neural/*.yaml; do case "$$c" in *mnist*) ;; \
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40
configs/layer1/E11.yaml
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configs/layer1/E11.yaml
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experiment: E11
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kind: dynamic_society
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seed: 20260705
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n_replicates: 12
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# (The dynamic Lamarckian society — the vertical claim, C3): a finite population of agents (genotypes)
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# evolves on a rugged NK fitness landscape that IS reality. The full society composes the four
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# operators the whole study built toward — grounding, directed recombination (sex), quality-diversity
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# selection, and mutation — and a 4-arm ablation shows each is load-bearing. Grounding is made load-
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# bearing via the consensus-conformity (self-consumption) mechanism: selection acts on
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# g*true_fitness + (1-g)*conformity, so at g=0 the society optimises agreement with its own majority
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# rather than reality and drifts to a fit-looking but actually-poor consensus. Expect: FULL climbs to
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# near the global optimum while maintaining diversity longest; NO_GROUNDING collapses to the unfit
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# consensus; NO_SEX plateaus (can't recombine to escape local optima); NO_DIVERSITY (greedy) collapses
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# diversity fast and stalls at a worse local optimum. Falsifier: an ablation matches the full society,
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# or the full society fails to exceed every ablation.
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society:
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L: 12
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K: 8 # landscape ruggedness (epistasis) — rugged enough that diversity + sex matter
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N: 60 # population size
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g: 0.85 # grounding fraction (overwritten to 0 in the no_grounding arm)
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mu: 0.03 # per-locus mutation rate
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novelty: 0.5 # quality-diversity weight (0 in the no_diversity/greedy arm)
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n_off: 120 # directed-recombination offspring pool per generation
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recomb_rate: 0.2 # crossover rate
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sex: true # directed recombination on (false in the no_sex arm)
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select: qd # quality-diversity survival (greedy in the no_diversity arm)
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generations: 80
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sweep:
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- param: arm
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values:
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- {name: full, set: {}}
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- {name: no_grounding, set: {society.g: 0.0}}
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- {name: no_sex, set: {society.sex: false}}
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- {name: no_diversity, set: {society.select: greedy, society.novelty: 0.0}}
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output: {dir: results/E11}
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68
figures/plot_E11.py
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figures/plot_E11.py
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"""E11 figure — the dynamic Lamarckian society: the vertical claim (C3).
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A finite population of agents evolves on a rugged NK landscape (reality). The **full** society —
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grounding + directed recombination (sex) + quality-diversity selection — climbs to the global optimum
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while maintaining diversity longest. A 4-arm ablation shows every operator is load-bearing, each
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breaking distinctly: **no_grounding** collapses to a fit-looking but actually-poor consensus
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(self-consumption); **no_sex** plateaus (can't recombine to escape local optima); **no_diversity**
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(greedy) collapses diversity fastest and stalls at a worse local optimum.
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Three panels over generations: (A) best real capability — the vertical climb, full highest, no_grounding
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crashing below the rest; (B) population diversity — full explores longest, no_grounding collapses
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almost immediately; (C) the self-consumption signature — conformity minus true fitness (how far the
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population's mutual agreement exceeds its real capability), largest for no_grounding. Reads only the
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committed bundle.
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Usage: python figures/plot_E11.py [results/E11]
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"""
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from __future__ import annotations
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import sys
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from pathlib import Path
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import matplotlib.pyplot as plt
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sys.path.insert(0, str(Path(__file__).parent))
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from _figlib import load_bundle, mean_ci, savefig # noqa: E402
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_ARMS = [("full", "#2ca02c", "full society"),
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("no_sex", "#ff7f0e", "no sex (no recombination)"),
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("no_diversity", "#9467bd", "no diversity (greedy)"),
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("no_grounding", "#d62728", "no grounding (self-consumption)")]
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def main(results_dir: str = "results/E11") -> None:
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df, _ = load_bundle(results_dir)
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arms = [a for a in _ARMS if a[0] in set(df["arm"].unique())]
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g_opt = df["global_opt"].mean()
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fig, axes = plt.subplots(1, 3, figsize=(16, 4.8))
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def traj(ax, col, title, ylabel, hline=None):
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for name, c, lab in arms:
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sub = df[df["arm"] == name]
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g, m, ci = mean_ci(sub, "generation", col)
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ax.plot(g, m, "-", color=c, lw=1.9, label=lab)
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ax.fill_between(g, m - ci, m + ci, color=c, alpha=0.15)
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if hline is not None:
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ax.axhline(hline[0], ls=":", color="gray", lw=1, label=hline[1])
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ax.set(xlabel="generation", ylabel=ylabel, title=title)
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ax.legend(frameon=False, fontsize=8)
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traj(axes[0], "best_fitness", "The vertical climb: general capability\n"
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"(full climbs highest; no-grounding collapses)", "best real fitness",
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hline=(g_opt, "global optimum"))
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traj(axes[1], "diversity", "Specialties maintained: diversity during search\n"
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"(full explores longest; ablations collapse fast)", "population diversity")
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traj(axes[2], "conformity_true_gap", "Self-consumption signature:\n"
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"agreement minus real capability", "conformity − true fitness")
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fig.suptitle("E11 — the dynamic Lamarckian society: grounding + directed sex + diversity climb to "
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"the optimum; remove any one and it breaks (the vertical claim, C3)", y=1.02, fontsize=12)
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fig.tight_layout()
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savefig(fig, results_dir, "E11")
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if __name__ == "__main__":
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main(*sys.argv[1:])
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BIN
results/E11/E11.pdf
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BIN
results/E11/E11.pdf
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BIN
results/E11/E11.png
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results/E11/E11.png
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After Width: | Height: | Size: 340 KiB |
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results/E11/README.md
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results/E11/README.md
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# E11 — the dynamic Lamarckian society: the vertical claim (C3)
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**Claim tested.** The culmination. Everything before was a *single operator*; the society's
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load-bearing, un-preempted claim is that composing them makes **general capability climb over
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generations while specialties are re-earned**, and that **every operator is necessary** — remove one
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and it breaks. This is blueprint C3, the "vertical."
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**Setup.** A finite population of `N=60` agents (genotypes of `L=12` biallelic loci) evolves on a
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**rugged Kauffman NK landscape** (`K=8`) that *is* reality. Each generation composes: grounding,
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**directed recombination (sex)**, **quality-diversity selection**, and mutation. Grounding is made
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load-bearing by the **consensus-conformity (self-consumption)** mechanism — selection acts on
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`g·true_fitness + (1−g)·conformity`, where conformity = agreement with the population's own consensus,
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so at `g=0` the society optimises fitting-the-crowd rather than reality. A 4-arm ablation, 12
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replicate landscapes, 80 generations.
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### Symbols
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- **agent** = a model (a genotype); **reality** = the NK fitness landscape; **grounding `g`** = share of the selection signal that is real fitness vs conformity.
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- **directed sex** = recombine many parents + keep the fittest offspring (E10). **quality-diversity** = select for capability *and* novelty, so specialties persist.
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- **conformity − true fitness** = how far the population's mutual agreement exceeds its real capability (the self-consumption "delusion" signature).
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### The three panels (over generations)
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1. **The vertical climb.** Best real capability: the **full society (green) climbs to the global
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optimum** (≈0.78 of 0.79), while **no_grounding (red) collapses** to a fit-looking but poor
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consensus (0.48). `no_sex` and `no_diversity` plateau *below* the full society.
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2. **Specialties maintained.** Population diversity: the **full society explores longest** (diversity
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decays slowly as it searches), while every ablation collapses diversity fast — `no_grounding`
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almost immediately.
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3. **Self-consumption signature.** Conformity minus true fitness: **largest for `no_grounding`** — the
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population strongly *agrees* while being *wrong*, the signature of training on its own consensus.
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### Takeaway — every operator is load-bearing
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- **full** → climbs to the optimum with diversity maintained. **The vertical claim.**
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- **no_grounding** → self-consumption collapse to an unfit consensus (train on the crowd → regress to a confident, wrong mean).
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- **no_sex** → can't recombine complementary specialists to escape local optima → plateaus below full.
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- **no_diversity (greedy)** → collapses diversity fastest, gets stuck at a *worse* local optimum.
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This integrates the whole study — E1–E6 (collapse/grounding/selection), the learning kernel, and
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E7–E10 (sexual transmission) — into one system, and shows the Lamarckian society needs **all** of
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grounding + directed sex + diversity to climb without collapsing. On a rugged landscape you need
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diversity to explore basins, sex to recombine them, and grounding to select on reality; remove any and
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you fail differently. **Falsifier (not triggered):** if any ablation had matched the full society, or
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the full society had failed to exceed every ablation, the integration claim would fail.
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results/E11/manifest.json
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results/E11/manifest.json
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{
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"experiment": "E11",
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"master_seed": 20260705,
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"git_commit": "48181a1c846f41e9254abe4b1d0f843d1df9667f",
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"python": "3.14.5",
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"libraries": {
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"numpy": "2.5.0",
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"scipy": "1.18.0",
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"pandas": "3.0.3",
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"pyarrow": "24.0.0"
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},
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"rows": 3888,
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"results_sha256": "e8d2c3ecb5200578d16a977d147b6ee05ebf83e1a81d9287f6a740114ef3968a"
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}
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results/E11/resolved_config.yaml
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results/E11/resolved_config.yaml
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experiment: E11
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seed: 20260705
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n_replicates: 12
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source_config:
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experiment: E11
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kind: dynamic_society
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seed: 20260705
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n_replicates: 12
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society:
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L: 12
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K: 8
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N: 60
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g: 0.85
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mu: 0.03
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novelty: 0.5
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n_off: 120
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recomb_rate: 0.2
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sex: true
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select: qd
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generations: 80
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sweep:
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- param: arm
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values:
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- name: full
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set: {}
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- name: no_grounding
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set:
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society.g: 0.0
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- name: no_sex
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set:
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society.sex: false
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- name: no_diversity
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set:
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society.select: greedy
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society.novelty: 0.0
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output:
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dir: results/E11
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src/knowledge/dynamic_society.py
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src/knowledge/dynamic_society.py
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|
|
@ -0,0 +1,143 @@
|
||||||
|
"""The dynamic Lamarckian society — the vertical claim (E11 / C3).
|
||||||
|
|
||||||
|
A finite population of ``N`` agents (genotypes of ``L`` biallelic loci) evolves on a Kauffman NK
|
||||||
|
landscape that *is* reality. The society climbs in real capability by composing the four operators the
|
||||||
|
whole study built toward — **grounding**, **directed recombination (sex)**, **quality-diversity
|
||||||
|
selection**, and mutation — and an ablation shows each is load-bearing.
|
||||||
|
|
||||||
|
The crux is what happens WITHOUT grounding. A plain genetic algorithm on true fitness would just
|
||||||
|
improve, so grounding must corrupt the *selection signal* to cause collapse. Here selection acts on a
|
||||||
|
**grounded score** ``g·true_fitness + (1−g)·conformity``, where conformity is agreement with the
|
||||||
|
population's own consensus (modal genotype). At ``g=0`` selection rewards fitting the crowd rather
|
||||||
|
than reality — self-consumption — and the society drifts to a fit-looking but actually-poor consensus,
|
||||||
|
losing diversity: the direct analogue of training on the majority of AI-generated outputs.
|
||||||
|
|
||||||
|
Four ablation arms, each breaking distinctly (only ``full`` avoids all three failures):
|
||||||
|
``full`` (climbs) · ``no_grounding`` (conformity collapse) · ``no_sex`` (stuck at local optima) ·
|
||||||
|
``no_diversity`` (collapses to one lineage, recombination starves).
|
||||||
|
"""
|
||||||
|
|
||||||
|
from __future__ import annotations
|
||||||
|
|
||||||
|
from typing import Any, Mapping
|
||||||
|
|
||||||
|
import numpy as np
|
||||||
|
import pandas as pd
|
||||||
|
|
||||||
|
from .genotype import bits_to_index, crossover, genotype_bits, nk_fitness
|
||||||
|
|
||||||
|
|
||||||
|
def _consensus(pop_bits: np.ndarray) -> np.ndarray:
|
||||||
|
"""Population consensus genotype: the modal allele at each locus (majority vote)."""
|
||||||
|
return (pop_bits.mean(axis=0) >= 0.5).astype(pop_bits.dtype)
|
||||||
|
|
||||||
|
|
||||||
|
def _conformity(pop_bits: np.ndarray, consensus: np.ndarray) -> np.ndarray:
|
||||||
|
"""Per-agent agreement with the consensus (fraction of loci matching the majority)."""
|
||||||
|
return (pop_bits == consensus[None, :]).mean(axis=1)
|
||||||
|
|
||||||
|
|
||||||
|
def _novelty(pop_bits: np.ndarray) -> np.ndarray:
|
||||||
|
"""Per-agent novelty: mean Hamming distance to the rest of the population (diversity signal)."""
|
||||||
|
N, L = pop_bits.shape
|
||||||
|
if N < 2:
|
||||||
|
return np.zeros(N)
|
||||||
|
# pairwise Hamming via allele agreement: distance_ij = L - matches; mean over j != i.
|
||||||
|
match = (pop_bits[:, None, :] == pop_bits[None, :, :]).sum(axis=2) # (N, N) matches
|
||||||
|
ham = L - match
|
||||||
|
return (ham.sum(axis=1) / (N - 1)) / L # normalised to [0,1]
|
||||||
|
|
||||||
|
|
||||||
|
def _directed_offspring(pop_bits, fitness, n_off, rate, rng):
|
||||||
|
"""Directed sex: make ``n_off`` recombinants from the whole population, return them ranked-ready.
|
||||||
|
|
||||||
|
Unbounded-parent crossover (the AI move); offspring selection happens in the survival step, so
|
||||||
|
here we just generate the candidate offspring bit-matrix.
|
||||||
|
"""
|
||||||
|
return np.stack([crossover(pop_bits, rate, rng) for _ in range(n_off)])
|
||||||
|
|
||||||
|
|
||||||
|
def run_dynamic_society(cfg: Mapping[str, Any], seed: int) -> pd.DataFrame:
|
||||||
|
"""Run one dynamic-society lineage; return per-generation metrics.
|
||||||
|
|
||||||
|
Args:
|
||||||
|
cfg (Mapping): Config with a ``society`` block (``L``, ``K`` landscape ruggedness, ``N``
|
||||||
|
population, ``g`` grounding, ``mu`` mutation, ``novelty`` QD weight, ``n_off`` offspring
|
||||||
|
pool, ``recomb_rate``, ``sex`` on/off, ``select`` in {``qd``, ``greedy``}) and
|
||||||
|
``generations``.
|
||||||
|
seed (int): Replicate seed; the landscape and the run are a pure function of it.
|
||||||
|
|
||||||
|
Returns:
|
||||||
|
pd.DataFrame: One row per generation with ``best_fitness`` (real), ``mean_fitness`` (real),
|
||||||
|
``diversity`` (mean normalised pairwise Hamming), ``consensus_fitness``,
|
||||||
|
``conformity_true_gap`` (mean conformity − mean true fitness; exposes the no-grounding
|
||||||
|
collapse), and ``global_opt``.
|
||||||
|
"""
|
||||||
|
soc = cfg["society"]
|
||||||
|
L, K, N = int(soc["L"]), int(soc["K"]), int(soc["N"])
|
||||||
|
g = float(soc.get("g", 1.0))
|
||||||
|
mu = float(soc.get("mu", 0.02))
|
||||||
|
novelty_w = float(soc.get("novelty", 0.0))
|
||||||
|
n_off = int(soc.get("n_off", N))
|
||||||
|
rate = float(soc.get("recomb_rate", 0.2))
|
||||||
|
sex = bool(soc.get("sex", True))
|
||||||
|
select = soc.get("select", "qd")
|
||||||
|
generations = int(cfg.get("generations", 100))
|
||||||
|
|
||||||
|
fitness = nk_fitness(L, K, seed) # reality
|
||||||
|
global_opt = float(fitness.max())
|
||||||
|
all_bits = genotype_bits(L)
|
||||||
|
rng = np.random.default_rng(seed)
|
||||||
|
|
||||||
|
# Initialise a diverse population of random genotypes.
|
||||||
|
pop = rng.integers(0, 2, size=(N, L)).astype(all_bits.dtype)
|
||||||
|
|
||||||
|
def true_fit(bits):
|
||||||
|
return np.array([fitness[bits_to_index(b)] for b in bits])
|
||||||
|
|
||||||
|
rows: list[dict] = []
|
||||||
|
|
||||||
|
def record(t: int) -> None:
|
||||||
|
tf = true_fit(pop)
|
||||||
|
cons = _consensus(pop)
|
||||||
|
conf = _conformity(pop, cons)
|
||||||
|
rows.append({
|
||||||
|
"generation": t,
|
||||||
|
"best_fitness": float(tf.max()),
|
||||||
|
"mean_fitness": float(tf.mean()),
|
||||||
|
"diversity": float(_novelty(pop).mean()),
|
||||||
|
"consensus_fitness": float(fitness[bits_to_index(cons)]),
|
||||||
|
"conformity_true_gap": float(conf.mean() - tf.mean()),
|
||||||
|
"global_opt": global_opt,
|
||||||
|
})
|
||||||
|
|
||||||
|
record(0)
|
||||||
|
for t in range(1, generations + 1):
|
||||||
|
# (1) candidate pool = current population + directed offspring (sex) or mutated clones.
|
||||||
|
if sex:
|
||||||
|
offspring = _directed_offspring(pop, fitness, n_off, rate, rng)
|
||||||
|
else: # asexual: offspring are mutated copies
|
||||||
|
idx = rng.integers(0, N, size=n_off)
|
||||||
|
offspring = pop[idx].copy()
|
||||||
|
# mutation on the offspring
|
||||||
|
flip = rng.random(offspring.shape) < mu
|
||||||
|
offspring = np.where(flip, 1 - offspring, offspring).astype(pop.dtype)
|
||||||
|
pool = np.concatenate([pop, offspring], axis=0)
|
||||||
|
|
||||||
|
# (2) grounded score: g*true_fitness + (1-g)*conformity (conformity vs the *current* consensus).
|
||||||
|
cons = _consensus(pop)
|
||||||
|
tf = true_fit(pool)
|
||||||
|
conf = _conformity(pool, cons)
|
||||||
|
score = g * tf + (1.0 - g) * conf
|
||||||
|
|
||||||
|
# (3) survival: QD (score + novelty) keeps diverse high-scorers; greedy keeps top score only.
|
||||||
|
if select == "qd" and novelty_w > 0.0:
|
||||||
|
nov = _novelty(pool)
|
||||||
|
merit = score + novelty_w * nov
|
||||||
|
else:
|
||||||
|
merit = score
|
||||||
|
keep = np.argsort(merit)[-N:] # elitist truncation survival
|
||||||
|
pop = pool[keep]
|
||||||
|
record(t)
|
||||||
|
|
||||||
|
return pd.DataFrame(rows)
|
||||||
|
|
@ -167,6 +167,46 @@ def run_genotype_experiment(cfg: dict) -> pd.DataFrame:
|
||||||
return out
|
return out
|
||||||
|
|
||||||
|
|
||||||
|
_DYNAMIC_KEYS = ("society", "generations")
|
||||||
|
|
||||||
|
|
||||||
|
def run_dynamic_experiment(cfg: dict) -> pd.DataFrame:
|
||||||
|
"""Run the dynamic society across an ``arm`` ablation sweep x replicates (E11).
|
||||||
|
|
||||||
|
Mirrors ``run_genotype_experiment`` but assembles the base from the ``society``/``generations``
|
||||||
|
blocks and calls ``run_dynamic_society``. Arms are named override bundles (reuse ``_apply_param``
|
||||||
|
``arm`` handling), e.g. ``no_grounding`` sets ``society.g=0``.
|
||||||
|
"""
|
||||||
|
from .dynamic_society import run_dynamic_society
|
||||||
|
|
||||||
|
base = {k: copy.deepcopy(cfg[k]) for k in _DYNAMIC_KEYS if k in cfg}
|
||||||
|
sweeps = cfg.get("sweep", [])
|
||||||
|
if isinstance(sweeps, dict):
|
||||||
|
sweeps = [sweeps]
|
||||||
|
params = [s["param"] for s in sweeps]
|
||||||
|
value_lists = [list(s["values"]) for s in sweeps]
|
||||||
|
combos = [({}, base)] if not sweeps else []
|
||||||
|
for values in itertools.product(*value_lists):
|
||||||
|
lin = copy.deepcopy(base)
|
||||||
|
label: dict = {}
|
||||||
|
for param, val in zip(params, values):
|
||||||
|
label.update(_apply_param(lin, param, val))
|
||||||
|
combos.append((label, lin))
|
||||||
|
|
||||||
|
seeds = spawn_seeds(int(cfg["seed"]), int(cfg["n_replicates"]))
|
||||||
|
frames: list[pd.DataFrame] = []
|
||||||
|
for label, lin in combos:
|
||||||
|
for rep, ss in enumerate(seeds):
|
||||||
|
df = run_dynamic_society(lin, int(ss.generate_state(1)[0]))
|
||||||
|
for col, val in label.items():
|
||||||
|
df[col] = val
|
||||||
|
df["replicate"] = rep
|
||||||
|
frames.append(df)
|
||||||
|
out = pd.concat(frames, ignore_index=True)
|
||||||
|
out.insert(0, "experiment", cfg["experiment"])
|
||||||
|
return out
|
||||||
|
|
||||||
|
|
||||||
def run_coverage(cfg: dict) -> pd.DataFrame:
|
def run_coverage(cfg: dict) -> pd.DataFrame:
|
||||||
"""E4 runner: multi-teacher recombination coverage (blueprint 2.5-E4 / 2.7.1).
|
"""E4 runner: multi-teacher recombination coverage (blueprint 2.5-E4 / 2.7.1).
|
||||||
|
|
||||||
|
|
@ -332,6 +372,8 @@ def run_and_save(config_path: str | Path) -> Path:
|
||||||
elif kind == "directed_sex":
|
elif kind == "directed_sex":
|
||||||
from .society import run_directed_sex # E10: directed sex beats biology
|
from .society import run_directed_sex # E10: directed sex beats biology
|
||||||
df = run_directed_sex(cfg)
|
df = run_directed_sex(cfg)
|
||||||
|
elif kind == "dynamic_society":
|
||||||
|
df = run_dynamic_experiment(cfg) # E11: the dynamic society (C3)
|
||||||
else:
|
else:
|
||||||
df = run_experiment(cfg)
|
df = run_experiment(cfg)
|
||||||
save_artifacts(cfg, df, out_dir)
|
save_artifacts(cfg, df, out_dir)
|
||||||
|
|
|
||||||
|
|
@ -296,11 +296,20 @@ C3 vertical claim deferred.*
|
||||||
risk when entangled (E9); directed sex resolves it (E10). `configs/layer1/{E9,E10}.yaml`,
|
risk when entangled (E9); directed sex resolves it (E10). `configs/layer1/{E9,E10}.yaml`,
|
||||||
`plot_{E9,E10}.py`, READMEs, +5 tests (117 green).
|
`plot_{E9,E10}.py`, READMEs, +5 tests (117 green).
|
||||||
|
|
||||||
## Remaining (all optional / next)
|
**2026-07-05 — the dynamic Lamarckian society (E11): the vertical claim / C3 realized.**
|
||||||
|
|
||||||
- [ ] **The dynamic society:** an evolving *population of parents* (specialists) that ground +
|
- `knowledge/dynamic_society.py`: finite population of N agents (genotypes) on a rugged NK landscape
|
||||||
recombine + select over generations — capability climbing while specialties are re-earned (the full
|
(reality); composes grounding + directed sex + quality-diversity selection + mutation. Grounding
|
||||||
C3, dynamic). E7/E8 give the static + single-population pieces; the multi-parent *lineage* is next.
|
made load-bearing via consensus-conformity (self-consumption): selection on
|
||||||
|
`g·true_fitness + (1-g)·conformity` (GG decision). `kind: dynamic_society` dispatch.
|
||||||
|
- **4-arm ablation (12 reps), each breaks distinctly (global_opt≈0.79):** full 0.78 (climbs to optimum,
|
||||||
|
diversity maintained longest); no_sex 0.77; no_diversity/greedy 0.74; **no_grounding 0.48
|
||||||
|
(self-consumption collapse to unfit consensus).** Only the full society climbs. Integrates E1-E6 +
|
||||||
|
kernel + E7-E10 into one system: needs ALL of grounding + directed sex + diversity.
|
||||||
|
- `configs/layer1/E11.yaml`, `plot_E11.py`, README, `tests/test_dynamic_society.py` (+5, 122 green).
|
||||||
|
Closes C3 analytically; the LLM rung remains the eventual empirical instantiation.
|
||||||
|
|
||||||
|
## Remaining (all optional / next)
|
||||||
- [ ] **NK/epistasis landscape** (sign epistasis can make recombination harmful — the honest limit of
|
- [ ] **NK/epistasis landscape** (sign epistasis can make recombination harmful — the honest limit of
|
||||||
"sex always helps"); **multi-allelic loci**. Deepens the frame.
|
"sex always helps"); **multi-allelic loci**. Deepens the frame.
|
||||||
- [ ] **Learning-kernel refinement:** truth-like smoothing prior (`prior="truth"`) + measurement floor
|
- [ ] **Learning-kernel refinement:** truth-like smoothing prior (`prior="truth"`) + measurement floor
|
||||||
|
|
|
||||||
58
tests/test_dynamic_society.py
Normal file
58
tests/test_dynamic_society.py
Normal file
|
|
@ -0,0 +1,58 @@
|
||||||
|
"""Dynamic-society tests (pure NumPy) — the culminating vertical claim (E11 / C3).
|
||||||
|
|
||||||
|
Cover the finite-population operators (consensus, conformity, novelty) and the four ablation
|
||||||
|
behaviours: the full society climbs to near the optimum; removing grounding collapses it to an unfit
|
||||||
|
consensus (self-consumption); removing sex or diversity leaves it stuck below the full society.
|
||||||
|
"""
|
||||||
|
|
||||||
|
from __future__ import annotations
|
||||||
|
|
||||||
|
import numpy as np
|
||||||
|
|
||||||
|
from knowledge.dynamic_society import _conformity, _consensus, _novelty, run_dynamic_society
|
||||||
|
|
||||||
|
|
||||||
|
def _run(arm_overrides: dict, seed: int = 0, gens: int = 50):
|
||||||
|
base = {"L": 10, "K": 6, "N": 50, "g": 0.85, "mu": 0.03, "novelty": 0.5,
|
||||||
|
"n_off": 100, "recomb_rate": 0.2, "sex": True, "select": "qd"}
|
||||||
|
base.update(arm_overrides)
|
||||||
|
return run_dynamic_society({"society": base, "generations": gens}, seed=seed)
|
||||||
|
|
||||||
|
|
||||||
|
def test_consensus_and_conformity():
|
||||||
|
pop = np.array([[1, 1, 0, 0], [1, 0, 0, 1], [1, 1, 1, 0]], dtype=np.int8)
|
||||||
|
cons = _consensus(pop)
|
||||||
|
assert np.array_equal(cons, [1, 1, 0, 0]) # majority vote per locus
|
||||||
|
conf = _conformity(pop, cons)
|
||||||
|
assert np.isclose(conf[0], 1.0) # agent 0 == consensus
|
||||||
|
assert conf.min() >= 0.0 and conf.max() <= 1.0
|
||||||
|
|
||||||
|
|
||||||
|
def test_novelty_is_zero_for_clones_and_high_for_spread():
|
||||||
|
clones = np.ones((4, 8), dtype=np.int8)
|
||||||
|
assert np.allclose(_novelty(clones), 0.0) # identical -> no diversity
|
||||||
|
spread = np.array([[0] * 8, [1] * 8], dtype=np.int8)
|
||||||
|
assert np.allclose(_novelty(spread), 1.0) # opposite -> maximal diversity
|
||||||
|
|
||||||
|
|
||||||
|
def test_full_society_climbs_toward_optimum():
|
||||||
|
df = _run({})
|
||||||
|
go = df["global_opt"].iloc[0]
|
||||||
|
assert df["best_fitness"].iloc[-1] > df["best_fitness"].iloc[0] + 0.05 # it climbs
|
||||||
|
assert df["best_fitness"].iloc[-1] > 0.9 * go # ... to near the optimum
|
||||||
|
|
||||||
|
|
||||||
|
def test_no_grounding_collapses_to_unfit_consensus():
|
||||||
|
full = _run({})["best_fitness"].iloc[-1]
|
||||||
|
dry = _run({"g": 0.0})
|
||||||
|
assert dry["best_fitness"].iloc[-1] < full - 0.1 # far below the grounded society
|
||||||
|
assert dry["diversity"].iloc[-1] < 0.05 # diversity collapsed
|
||||||
|
assert dry["conformity_true_gap"].iloc[-1] > 0.3 # agreement >> real capability (delusion)
|
||||||
|
|
||||||
|
|
||||||
|
def test_ablations_stay_below_the_full_society():
|
||||||
|
full = _run({})["best_fitness"].iloc[-1]
|
||||||
|
no_sex = _run({"sex": False})["best_fitness"].iloc[-1]
|
||||||
|
no_div = _run({"select": "greedy", "novelty": 0.0})["best_fitness"].iloc[-1]
|
||||||
|
assert no_sex <= full + 1e-6 and no_div <= full + 1e-6 # neither beats the full society
|
||||||
|
assert min(no_sex, no_div) < full # ... and at least one is strictly worse
|
||||||
Loading…
Add table
Add a link
Reference in a new issue